SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: SCARNA27 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_098900496 chr6:8058469-8100722 Sample_02_0989 Kidney kidney cortex_WT 496 15 1169 138 2 70 384 EEF1E1-BLOC1S5,EEF1E1,SCARNA27,BLOC1S5,BLOC1S5-TXNDC5
SE_02_048100836 chr6:8064521-8110029 Sample_02_0481 Mammary gland MDA-MB231 836 7 1280 152 4 77 366 EEF1E1-BLOC1S5,EEF1E1,SCARNA27,BLOC1S5-TXNDC5
SE_02_132801270 chr6:8073715-8089499 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 1270 7 450 52 1 25 122 EEF1E1-BLOC1S5,EEF1E1,SCARNA27,BLOC1S5-TXNDC5
SE_02_134500674 chr6:8073852-8086010 Sample_02_1345 Leukophereses leukophereses_p358 674 8 332 38 1 25 64 EEF1E1-BLOC1S5,EEF1E1,SCARNA27,BLOC1S5-TXNDC5
SE_02_156800612 chr6:8073957-8089227 Sample_02_1568 Heart Cardiac progenitor cells 612 3 437 52 1 25 122 EEF1E1-BLOC1S5,EEF1E1,SCARNA27,BLOC1S5-TXNDC5
SE_02_003000291 chr6:8077891-8085149 Sample_02_0030 Kidney human kidney proximal tubule cells 291 3 172 18 1 25 64 EEF1E1-MUTED,EEF1E1,SCARNA27,MUTED-TXNDC5
SE_02_075400393 chr6:8078189-8085206 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 393 2 167 17 1 25 64 EEF1E1-BLOC1S5,EEF1E1,SCARNA27,BLOC1S5-TXNDC5
SE_01_002600368 chr6:8079623-8086562 Sample_01_0026 Umbilical vein endothelial-cell-of-umbilical-vein 368 1 177 22 1 22 68 EEF1E1-MUTED,EEF1E1,SCARNA27,MUTED-TXNDC5
SE_02_062000862 chr6:8079748-8084509 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 862 3 109 12 0 22 24 EEF1E1-BLOC1S5,EEF1E1,SCARNA27,BLOC1S5-TXNDC5
SE_02_103300475 chr6:8083003-8103346 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 475 3 584 69 2 18 251 EEF1E1-BLOC1S5,EEF1E1,SCARNA27,BLOC1S5-TXNDC5
Genomic distribution of SEs associated with SCARNA27
Genome Browser

The strength of the tissue affected by the gene

Expression of SCARNA27

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)