Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000137075 |
| Gene: | RNF38 | Gene type: | protein_coding |
| Strand: | - | External links: |
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| Genomic region: | chr9:36336396-36487548 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_104900269 | chr9:36330574-36505290 |
Sample_02_1049 | Peripheral blood | CD4+ cell_ROMI | 269 | 90 | 4447 | 161 | 2 | 383 | 1060 | RNF38 |
| SE_02_023400354 | chr9:36337569-36493635 |
Sample_02_0234 | Tonsil | Th17 | 354 | 29 | 3944 | 142 | 2 | 321 | 951 | RNF38 |
| SE_02_058300018 | chr9:36341664-36341998 |
Sample_02_0583 | Liver | HuH-7 | 18 | 1 | 4 | 1 | 0 | 0 | 0 | RNF38 |
| SE_02_146000807 | chr9:36378414-36403204 |
Sample_02_1460 | Blood | Mutz-3 | 807 | 6 | 618 | 24 | 0 | 63 | 385 | RNF38 |
| SE_02_143301865 | chr9:36391734-36423541 |
Sample_02_1433 | Bone | A673 STAG2 null | 1865 | 9 | 789 | 31 | 0 | 72 | 331 | RNF38 |
| SE_02_098901791 | chr9:36396495-36424608 |
Sample_02_0989 | Kidney | kidney cortex_WT | 1791 | 7 | 688 | 29 | 0 | 74 | 331 | RNF38 |
| SE_01_002100598 | chr9:36397277-36402337 |
Sample_01_0021 | Skin | bipolar-neuron | 598 | 1 | 144 | 7 | 0 | 48 | 331 | RNF38 |
| SE_01_005100125 | chr9:36399435-36425493 |
Sample_01_0051 | Embryo | neural-progenitor-cell | 125 | 4 | 629 | 23 | 0 | 74 | 331 | RNF38 |
| SE_02_003900631 | chr9:36399512-36404108 |
Sample_02_0039 | Embryo | AFG | 631 | 1 | 107 | 4 | 0 | 45 | 331 | RNF38 |
| SE_02_101700668 | chr9:36406668-36488818 |
Sample_02_1017 | Embryo | H9_Mesendoderm 24h_Hydroxyurea | 668 | 18 | 2090 | 70 | 2 | 116 | 0 | RNF38 |
| SE_02_103600341 | chr9:36406828-36488206 |
Sample_02_1036 | Mammary gland | HCC70_XY018 | 341 | 37 | 2066 | 68 | 2 | 112 | 0 | RNF38 |
| SE_02_104701130 | chr9:36432402-36507641 |
Sample_02_1047 | Peripheral blood | CD4+ cells_CTCL1181 | 1130 | 32 | 1911 | 68 | 2 | 148 | 0 | RNF38 |
| SE_02_012400648 | chr9:36434485-36450921 |
Sample_02_0124 | Embryo | Embryonic-stem-cells_Naive | 648 | 2 | 381 | 6 | 1 | 4 | 0 | RNF38 |
| SE_02_141001357 | chr9:36436891-36489080 |
Sample_02_1410 | Brain | GSC6 | 1357 | 10 | 1327 | 47 | 2 | 94 | 0 | RNF38 |
| SE_02_044500547 | chr9:36441403-36502082 |
Sample_02_0445 | Lung | lung metastasis from primary osteosarcoma tumor M10 | 547 | 19 | 1543 | 63 | 2 | 126 | 0 | RNF38 |
| SE_02_118500922 | chr9:36446015-36488923 |
Sample_02_1185 | Brain | GBM14 | 922 | 10 | 1131 | 46 | 2 | 90 | 0 | RNF38 |
| SE_02_097100865 | chr9:36448036-36500611 |
Sample_02_0971 | Brain | H3.3K27M_XPS124018_xenograft | 865 | 10 | 1363 | 59 | 2 | 114 | 0 | RNF38 |
| SE_02_104801218 | chr9:36448798-36503011 |
Sample_02_1048 | Peripheral blood | CD4+ cell_UNTREATED | 1218 | 15 | 1404 | 59 | 1 | 124 | 0 | RNF38 |
| SE_02_143201367 | chr9:36455196-36503751 |
Sample_02_1432 | Bone | A673 STAG2 WT | 1367 | 12 | 1254 | 52 | 1 | 130 | 0 | RNF38 |
| SE_00_000900940 | chr9:36456201-36494528 |
Sample_00_0009 | Blood | CD8-positive-alpha-beta-T-cell | 940 | 6 | 995 | 40 | 1 | 94 | 0 | RNF38 |
| SE_01_008401442 | chr9:36456309-36493880 |
Sample_01_0084 | Spleen | spleen | 1442 | 8 | 976 | 39 | 1 | 93 | 0 | RNF38 |
| SE_02_119301012 | chr9:36460184-36499773 |
Sample_02_1193 | Brain | GBM27 | 1012 | 7 | 1014 | 42 | 1 | 108 | 0 | RNF38 |
| SE_02_096300565 | chr9:36460401-36500271 |
Sample_02_0963 | Brain | H3.3K27M_Tumor-derived cell-line_G477p6_cells | 565 | 5 | 1022 | 43 | 1 | 114 | 0 | RNF38 |
| SE_02_096900826 | chr9:36461019-36500291 |
Sample_02_0969 | Brain | H3.3K27M_PL637 | 826 | 9 | 1012 | 42 | 1 | 114 | 0 | RNF38 |
| SE_02_103500655 | chr9:36469399-36488328 |
Sample_02_1035 | Mammary gland | HCC70_Vehicle | 655 | 4 | 488 | 13 | 1 | 72 | 0 | RNF38 |
Genomic distribution of SEs associated with RNF38