Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000082996 |
| Gene: | RNF13 | Gene type: | protein_coding |
| Strand: | + | External links: |
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| Genomic region: | chr3:149812770-149962139 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_066001005 | chr3:149808010-149820349 |
Sample_02_0660 | Mammary gland | MCF10DCIS | 1005 | 5 | 290 | 27 | 1 | 16 | 270 | RNF13,ANKUB1 |
| SE_02_074800861 | chr3:149808185-149817535 |
Sample_02_0748 | Mammary gland | HCC1599_WO | 861 | 4 | 220 | 20 | 1 | 14 | 270 | RNF13,ANKUB1 |
| SE_02_092800150 | chr3:149808445-149852166 |
Sample_02_0928 | Peripheral blood | neutrophils_Ecoli | 150 | 15 | 1053 | 77 | 2 | 40 | 303 | RNF13,ANKUB1 |
| SE_02_010100554 | chr3:149808548-149830104 |
Sample_02_0101 | Peripheral blood | Macrophages_GM-CSF_72h_IFN-y | 554 | 2 | 516 | 39 | 2 | 27 | 270 | RNF13,C3ORF16 |
| SE_02_010200567 | chr3:149809370-149818858 |
Sample_02_0102 | Peripheral blood | Macrophages_GM-CSF_72h_IL4 | 567 | 1 | 222 | 24 | 1 | 14 | 270 | RNF13,C3ORF16 |
| SE_01_008801139 | chr3:149809420-149829920 |
Sample_01_0088 | Tibial nerve | tibial-nerve | 1139 | 4 | 495 | 39 | 2 | 27 | 270 | RNF13,C3ORF16 |
| SE_02_010000473 | chr3:149809547-149818602 |
Sample_02_0100 | Peripheral blood | Macrophages_GM-CSF_72h | 473 | 2 | 215 | 24 | 1 | 14 | 270 | RNF13,C3ORF16 |
| SE_02_093700330 | chr3:149809885-149819776 |
Sample_02_0937 | Retinal Pigmented Epithelial | RPE190_Con | 330 | 3 | 230 | 23 | 1 | 16 | 270 | RNF13,ANKUB1 |
| SE_02_149400208 | chr3:149810058-149818027 |
Sample_02_1494 | Other | monocyte-derived dendritic cells_0h | 208 | 4 | 189 | 19 | 1 | 14 | 270 | RNF13,ANKUB1,PFN2,COMMD2 |
| SE_02_135000794 | chr3:149811629-149818535 |
Sample_02_1350 | Leukophereses | leukophereses_p456 | 794 | 1 | 176 | 21 | 1 | 14 | 270 | RNF13,ANKUB1 |
| SE_02_153000873 | chr3:149811681-149822610 |
Sample_02_1530 | Peripheral blood | neutrophils_0BA0X | 873 | 2 | 253 | 26 | 1 | 20 | 270 | RNF13,ANKUB1 |
| SE_01_004501090 | chr3:149811728-149818381 |
Sample_01_0045 | Mammary gland | mammary-epithelial-cell | 1090 | 2 | 169 | 18 | 1 | 13 | 270 | RNF13,C3ORF16 |
| SE_00_000600466 | chr3:149811827-149817489 |
Sample_00_0006 | Blood | CD14-positive-monocyte | 466 | 2 | 146 | 14 | 1 | 13 | 270 | RNF13,C3ORF16 |
| SE_00_003901183 | chr3:149811922-149814565 |
Sample_00_0039 | Spleen | spleen_3y | 1183 | 1 | 87 | 8 | 1 | 12 | 270 | RNF13,C3ORF16 |
| SE_02_152901073 | chr3:149811946-149818574 |
Sample_02_1529 | Peripheral blood | neutrophils_0BC75 | 1073 | 1 | 171 | 19 | 1 | 13 | 270 | RNF13,ANKUB1 |
| SE_02_118900659 | chr3:149811990-149815483 |
Sample_02_1189 | Brain | GBM22 | 659 | 2 | 109 | 12 | 1 | 13 | 270 | RNF13,ANKUB1 |
| SE_02_153100710 | chr3:149812015-149818578 |
Sample_02_1531 | Peripheral blood | neutrophils_0B9ZK | 710 | 1 | 170 | 19 | 1 | 13 | 270 | RNF13,ANKUB1 |
| SE_02_117500621 | chr3:149812062-149848302 |
Sample_02_1175 | Brain | GBM03 | 621 | 6 | 892 | 65 | 2 | 35 | 303 | RNF13,ANKUB1 |
| SE_02_137100881 | chr3:149812072-149815289 |
Sample_02_1371 | Pancreas | Patu899S-untreated | 881 | 1 | 103 | 10 | 1 | 12 | 270 | RNF13,ANKUB1 |
| SE_00_002201111 | chr3:149812078-149814440 |
Sample_00_0022 | Lung | lung_30y | 1111 | 1 | 77 | 7 | 1 | 11 | 270 | RNF13,C3ORF16 |
Genomic distribution of SEs associated with RNF13