SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000204941
Gene: PSG5 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:43166256-43186536 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_136000010 chr19:43103848-43236274 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 10 34 5989 774 6 1 1554 PSG4,LOC284344,PSG5,PSG2,PSG9
SE_02_049100132 chr19:43103864-43210188 Sample_02_0491 Pharyng Detroit 562-Control 132 32 5020 643 6 0 1108 PSG4,PSG5,PSG2,LOC284344
SE_02_026400298 chr19:43104130-43165231 Sample_02_0264 Skeletal muscle 7250-empty 298 6 2443 307 2 0 0 PSG5,PSG2,PSG4
SE_02_005400446 chr19:43104227-43165193 Sample_02_0054 Lung IMR-90_DMSO_1 446 11 2434 303 2 0 0 PSG5,PSG2,PSG4
SE_02_005500269 chr19:43104411-43165143 Sample_02_0055 Lung IMR-90_Nutlin-3a 269 10 2421 297 2 0 0 PSG5,PSG2,PSG4
SE_02_136200015 chr19:43104452-43236282 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 15 35 5956 764 6 1 1554 PSG4,LOC284344,PSG5,PSG2,PSG9
SE_02_072700104 chr19:43104547-43165237 Sample_02_0727 Fetal lung IMR90_Etoposide 104 15 2421 298 2 0 0 PSG5,PSG2,PSG4,PSG11
SE_02_050000180 chr19:43104587-43165410 Sample_02_0500 Fetal lung IMR90_#2 180 38 2433 300 2 0 0 PSG5,PSG2,PSG4,PSG11
SE_02_056900603 chr19:43104702-43164712 Sample_02_0569 Periodontal ligament mesenchymal stem cell 603 29 2381 294 2 0 0 PSG5,PSG2,PSG4
SE_02_158300371 chr19:43105150-43164629 Sample_02_1583 Fetal lung IMR90_empty_GM 371 25 2364 292 2 0 0 PSG5,PSG2,PSG4,PSG11
SE_02_144900018 chr19:43105160-43240750 Sample_02_1449 Adipose SW872_YAP_TFE3 18 29 6086 776 6 1 1554 PSG4,LOC284344,PSG5,PSG2,PSG9
SE_02_113300473 chr19:43118912-43155948 Sample_02_1133 Liver Hepatic stellate cells 473 7 1430 155 2 0 0 PSG5,PSG2,PSG4
SE_02_060500279 chr19:43137613-43150661 Sample_02_0605 Skin Skin Fibroblast_DMSO 279 1 526 66 0 0 0 PSG5
SE_02_060600177 chr19:43138221-43151776 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 177 1 555 71 0 0 0 PSG5
SE_02_061000836 chr19:43139921-43150757 Sample_02_0610 Liposarcoma MLS 1765-92 836 1 467 63 0 0 0 PSG5
SE_02_102500246 chr19:43144558-43207830 Sample_02_1025 Esophagus KYSE150 246 25 3280 409 4 0 1108 PSG4,PSG5,LOC284344
SE_02_152400426 chr19:43145200-43164603 Sample_02_1524 Lung H3122 DMSO 426 7 770 88 0 0 0 PSG5,PSG4
SE_02_139000034 chr19:43145252-43155072 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 34 3 414 50 0 0 0 PSG5
SE_02_049200269 chr19:43145290-43208493 Sample_02_0492 Pharyng Detroit 562_LPS 269 24 3290 405 4 0 1108 PSG4,PSG5,LOC284344
SE_02_136100465 chr19:43145706-43165355 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 465 10 797 91 0 0 0 PSG5,PSG4
SE_02_076300287 chr19:43145963-43203835 Sample_02_0763 Podocyte podocyte_DEX 287 7 2891 351 4 0 911 PSG4,PSG5,LOC284344
SE_02_048000969 chr19:43146638-43164554 Sample_02_0480 Gingival epithelial HGEP 969 9 716 78 0 0 0 PSG5,PSG4
SE_02_094801067 chr19:43146845-43165074 Sample_02_0948 Pharyng Detroit562 1067 4 736 80 0 0 0 PSG5,PSG4
SE_02_060300572 chr19:43147116-43162665 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 572 2 617 70 0 0 0 PSG5,PSG4
SE_02_139800178 chr19:43147184-43204818 Sample_02_1398 Bone U2OS_siNC 178 14 2914 350 4 0 990 PSG4,PSG5,LOC284344
SE_02_078000282 chr19:43158173-43208348 Sample_02_0780 Liver SMMC-7721 282 10 2757 343 4 0 1108 PSG4,PSG5,LOC284344
SE_02_093001095 chr19:43161868-43185261 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1095 10 1192 159 1 0 385 PSG5,PSG4,PSG9,PSG2
SE_02_026300350 chr19:43162367-43207277 Sample_02_0263 Osteoblastic hFOB_undifferentiated 350 8 2539 317 4 0 1108 PSG4,PSG5,LOC284344
SE_02_045200128 chr19:43162736-43205731 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 128 9 2360 292 4 0 1071 PSG4,PSG5,LOC284344
SE_02_038000311 chr19:43163952-43207980 Sample_02_0380 Skeletal muscle RH18 311 10 2524 315 4 0 1108 PSG4,PSG5,LOC284344
SE_02_063700672 chr19:43164052-43185109 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 672 6 1098 148 1 0 366 PSG5,PSG4
SE_02_069700411 chr19:43172693-43210153 Sample_02_0697 Lung NCI-H1048-cas9_sgHROSA 411 13 2203 286 3 0 1001 PSG4,PSG5,LOC284344
SE_02_060600151 chr19:43176353-43188332 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 151 1 727 96 0 0 189 PSG5,PSG4
SE_02_086900851 chr19:43176417-43203806 Sample_02_0869 Fibroblast VH10_NO_UV 851 14 1559 188 3 0 607 PSG4,PSG5,LOC284344
SE_02_060500183 chr19:43176659-43188127 Sample_02_0605 Skin Skin Fibroblast_DMSO 183 1 683 94 0 0 189 PSG5,PSG4
SE_02_031700768 chr19:43177343-43192091 Sample_02_0317 Neuroblastoma GICAN 768 1 872 118 0 0 189 PSG5,PSG4
SE_02_043500095 chr19:43177938-43208734 Sample_02_0435 Kidney HEK293A_WT-MEF2B_DMSO_6h 95 5 1872 223 3 0 807 PSG4,PSG5,LOC284344
SE_02_061000172 chr19:43178107-43189763 Sample_02_0610 Liposarcoma MLS 1765-92 172 1 730 94 0 0 189 PSG5,PSG4
SE_02_050000480 chr19:43178144-43210839 Sample_02_0500 Fetal lung IMR90_#2 480 14 1968 254 3 0 807 PSG4,PSG5,LOC284344,PSG9
SE_02_076200866 chr19:43178329-43208487 Sample_02_0762 Podocyte podocyte_CTL 866 8 1844 222 3 0 807 PSG4,PSG5,LOC284344
SE_02_063600117 chr19:43178390-43203960 Sample_02_0636 Skin BJ5ta 117 5 1480 173 3 0 633 PSG4,PSG5,LOC284344
SE_02_051600555 chr19:43178768-43208513 Sample_02_0516 Esophagus KYSE70 555 13 1815 221 3 0 807 PSG4,PSG5,LOC284344
SE_02_026500284 chr19:43178967-43211299 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 284 5 1947 258 3 0 807 PSG4,PSG5,LOC284344
SE_02_039500603 chr19:43178982-43211093 Sample_02_0395 Mammary gland BT-549 603 8 1936 258 3 0 807 PSG4,PSG5,LOC284344
SE_02_094800211 chr19:43178998-43208013 Sample_02_0948 Pharyng Detroit562 211 3 1774 219 3 0 807 PSG4,PSG5,LOC284344
SE_02_124000082 chr19:43179033-43207202 Sample_02_1240 Skin MCC13_virus_negative 82 8 1709 213 3 0 807 PSG4,PSG5,LOC284344
SE_02_139900281 chr19:43179055-43204994 Sample_02_1399 Bone U2OS_siMLL3.1 281 7 1495 182 3 0 689 PSG4,PSG5,LOC284344
SE_02_156600482 chr19:43179311-43188915 Sample_02_1566 Dermal Dermal fibroblast 482 1 599 79 0 0 189 PSG5,PSG4,PSG9,PSG2
SE_02_088101032 chr19:43179365-43187080 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 1032 1 428 63 0 0 189 PSG5,PSG4
SE_02_045100523 chr19:43179374-43189339 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 523 1 623 84 0 0 189 PSG5,PSG4
SE_02_088300798 chr19:43179395-43187027 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 798 1 422 62 0 0 189 PSG5,PSG4
SE_02_113200397 chr19:43179407-43204076 Sample_02_1132 Pancreas KLM1 wt 397 7 1406 167 3 0 644 PSG4,PSG5,LOC284344
SE_02_113700526 chr19:43179409-43203869 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 526 5 1397 167 3 0 616 PSG4,PSG5,LOC284344
SE_02_048000467 chr19:43179511-43203693 Sample_02_0480 Gingival epithelial HGEP 467 5 1377 166 3 0 594 PSG4,PSG5,LOC284344
SE_02_127200238 chr19:43179559-43203671 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 238 13 1373 166 3 0 594 PSG4,PSG5,LOC284344
SE_02_154800492 chr19:43179605-43205576 Sample_02_1548 Gastrointestinal Stromal GIST-226 492 10 1488 179 3 0 741 PSG4,PSG5,LOC284344
SE_02_127100483 chr19:43179628-43203756 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 483 8 1372 165 3 0 596 PSG4,PSG5,LOC284344
SE_02_135500257 chr19:43179678-43206189 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 257 3 1539 189 3 0 807 PSG4,PSG5,LOC284344
SE_02_005400678 chr19:43179735-43185339 Sample_02_0054 Lung IMR-90_DMSO_1 678 2 303 45 0 0 87 PSG5,PSG4
SE_02_072700057 chr19:43179746-43207224 Sample_02_0727 Fetal lung IMR90_Etoposide 57 5 1653 206 3 0 807 PSG4,PSG5,LOC284344
SE_02_061900585 chr19:43179748-43205241 Sample_02_0619 Head and Neck HPV+ HNSCC_SCC-047 585 4 1453 177 3 0 689 PSG4,PSG5,LOC284344
SE_02_006900287 chr19:43179761-43208663 Sample_02_0069 Brain SF268 287 6 1748 214 3 0 807 PSG4,PSG5,LOC284344
SE_02_050500556 chr19:43179773-43208513 Sample_02_0505 Esophagus KYSE70_1 556 10 1741 214 3 0 807 PSG4,PSG5,LOC284344
SE_02_005500240 chr19:43179794-43206733 Sample_02_0055 Lung IMR-90_Nutlin-3a 240 2 1585 198 3 0 807 PSG4,PSG5,LOC284344
SE_02_132800180 chr19:43180245-43210519 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 180 10 1812 237 3 0 807 PSG4,PSG5,LOC284344
SE_02_093801075 chr19:43180403-43184744 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1075 1 216 38 0 0 13 PSG5,PSG4
SE_02_153800311 chr19:43180412-43206989 Sample_02_1538 Mammary gland MDA-MB-231 311 2 1580 197 3 0 807 PSG4,PSG5,LOC284344
SE_02_157100446 chr19:43180496-43205593 Sample_02_1571 Fibroblast Fibroblast cells 446 3 1435 173 3 0 743 PSG4,PSG5,LOC284344
SE_02_158401193 chr19:43180502-43184823 Sample_02_1584 Brain U87 GBM_Mock 1193 1 220 38 0 0 27 PSG5,PSG4
SE_02_026100925 chr19:43180560-43206779 Sample_02_0261 Osteoblastic hFOB_differentiated 925 2 1541 193 3 0 807 PSG4,PSG5,LOC284344
SE_02_112100053 chr19:43180610-43209497 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 53 11 1731 221 3 0 807 PSG4,PSG5,LOC284344,PSG9,PSG2
SE_02_114900286 chr19:43180629-43203942 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 286 3 1322 159 3 0 628 PSG4,PSG5,LOC284344
SE_02_064200421 chr19:43180665-43207871 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 421 8 1644 206 3 0 807 PSG4,PSG5,LOC284344
SE_02_059600349 chr19:43180696-43203693 Sample_02_0596 Mammary gland MCF10A_ DMSO 349 3 1302 159 3 0 594 PSG4,PSG5,LOC284344
SE_02_027401146 chr19:43180768-43207267 Sample_02_0274 Endometriosis hTERT_KD 1146 3 1594 200 3 0 807 PSG4,PSG5,LOC284344
SE_02_026400345 chr19:43180818-43204312 Sample_02_0264 Skeletal muscle 7250-empty 345 2 1332 158 3 0 678 PSG4,PSG5,LOC284344
SE_02_026200945 chr19:43180828-43206462 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 945 3 1499 189 3 0 807 PSG4,PSG5,LOC284344
SE_02_113300943 chr19:43180831-43186936 Sample_02_1133 Liver Hepatic stellate cells 943 1 332 53 0 0 189 PSG5,PSG4
SE_02_094500091 chr19:43181013-43210603 Sample_02_0945 Brain SF767 91 11 1774 234 3 0 807 PSG4,PSG5,LOC284344
SE_02_065201332 chr19:43181053-43203528 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1332 9 1281 157 3 0 594 PSG4,PSG5,LOC284344
Genomic distribution of SEs associated with PSG5
Genome Browser

The strength of the tissue affected by the gene

Expression of PSG5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)