SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000196415
Gene: PRTN3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:840999-848175 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_046400073 chr19:823971-844922 Sample_02_0464 Bone marrow MOLM-13 73 9 973 72 1 9 1117 AZU1,PRTN3,CFD,LPPR3,ELANE,MIR3187,MIR4745,MED16,PTBP1
SE_02_014400074 chr19:833199-853854 Sample_02_0144 Peripheral blood MV411_DMSO 74 1 866 64 2 20 1207 ELANE,PRTN3,CFD,LPPR3,AZU1,MIR3187,MED16,PTBP1
SE_02_025500323 chr19:833388-842054 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 323 1 451 40 1 1 133 PRTN3,CFD,LPPR3,ELANE,AZU1,MIR3187,PTBP1
SE_02_025600262 chr19:833407-842056 Sample_02_0256 Peripheral blood MV411 262 1 451 40 1 1 133 PRTN3,CFD,LPPR3,ELANE,AZU1,MIR3187,PTBP1
SE_02_057700147 chr19:834263-854577 Sample_02_0577 Blood MOLM13_empty 147 1 835 62 2 20 1207 ELANE,PRTN3,CFD,LPPR3,AZU1,MIR3187,MIR4745,MED16,PTBP1
SE_02_033400231 chr19:838070-854789 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 231 1 617 39 2 20 1207 ELANE,PRTN3,CFD,LPPR3,AZU1,MIR3187,MED16,PTBP1
SE_02_068200571 chr19:838082-844272 Sample_02_0682 Blood Kasumi-1 571 1 271 25 1 9 421 PRTN3,CFD,LPPR3,ELANE,AZU1,MIR3187,MIR4745,MED16,PTBP1
SE_02_058100161 chr19:838104-854600 Sample_02_0581 Blood MOLM13_empty_HG 161 1 607 39 2 20 1207 ELANE,PRTN3,CFD,LPPR3,AZU1,MIR3187,MIR4745,MED16,PTBP1
SE_02_058200233 chr19:838105-854511 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 233 1 606 39 2 20 1207 ELANE,PRTN3,CFD,LPPR3,AZU1,MIR3187,MIR4745,MED16,PTBP1
SE_02_099400866 chr19:838131-844234 Sample_02_0994 Blood MOLM13_SIK3TQ 866 1 261 25 1 9 421 PRTN3,CFD,LPPR3,ELANE,AZU1,MIR3187,MIR4745,MED16,PTBP1
SE_02_057400266 chr19:838140-854471 Sample_02_0574 Blood MOLM-13_sgNeg2 266 1 600 39 2 20 1207 ELANE,PRTN3,CFD,LPPR3,AZU1,MIR3187,MIR4745,MED16,PTBP1
SE_02_099500780 chr19:838141-844222 Sample_02_0995 Blood MOLM-13_empty vector 780 1 260 25 1 9 418 PRTN3,CFD,LPPR3,ELANE,AZU1,MIR3187,MIR4745,MED16,PTBP1
SE_02_057800265 chr19:838149-854241 Sample_02_0578 Blood MOLM-13_sgSIK3e4 265 1 596 39 2 20 1207 ELANE,PRTN3,CFD,LPPR3,AZU1,MIR3187,MIR4745,MED16,PTBP1
SE_02_099300791 chr19:838626-844238 Sample_02_0993 Blood MOLM-13_empty 791 1 249 24 0 9 421 PRTN3,CFD,LPPR3,ELANE,AZU1,MIR3187,MIR4745,MED16,PTBP1
Genomic distribution of SEs associated with PRTN3
Genome Browser

The strength of the tissue affected by the gene

Expression of PRTN3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)