SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000110844
Gene: PRPF40B Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:49568218-49644666 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104900265 chr12:49613799-49704757 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 265 57 2149 126 4 306 4833 PRPF40B,FMNL3,TMBIM6,MCRS1,FAM186B
SE_02_103602044 chr12:49619603-49628667 Sample_02_1036 Mammary gland HCC70_XY018 2044 2 186 11 1 46 346 PRPF40B,FAM186B
SE_02_103502209 chr12:49619732-49628498 Sample_02_1035 Mammary gland HCC70_Vehicle 2209 2 172 11 1 46 346 PRPF40B,FAM186B
SE_02_104800385 chr12:49621189-49678178 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 385 24 1348 68 4 259 4833 PRPF40B,FMNL3,FAM186B
SE_01_007800816 chr12:49621646-49676045 Sample_01_0078 Heart left ventricle heart-left-ventricle 816 6 1292 62 4 256 4833 FMNL3,PRPF40B,FAM186B
SE_02_098901351 chr12:49621922-49705859 Sample_02_0989 Kidney kidney cortex_WT 1351 16 1985 119 4 306 4833 PRPF40B,FMNL3,TMBIM6,FAM186B
SE_02_143201013 chr12:49625734-49685460 Sample_02_1432 Bone A673 STAG2 WT 1013 30 1445 74 4 234 4487 PRPF40B,FMNL3,FAM186B
SE_02_119500402 chr12:49627469-49685332 Sample_02_1195 Brain GBM29 402 22 1404 70 3 232 4487 PRPF40B,FMNL3,FAM186B
SE_02_094900726 chr12:49627981-49674885 Sample_02_0949 Umbilical artery HUAEC_WT 726 17 1147 50 3 208 4487 PRPF40B,FMNL3,FAM186B,NCKAP5L,TMBIM6,MCRS1,SPATS2
SE_02_104601512 chr12:49631567-49691062 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1512 22 1441 76 3 233 4297 PRPF40B,FMNL3,FAM186B
SE_02_143301232 chr12:49632417-49674186 Sample_02_1433 Bone A673 STAG2 null 1232 24 1019 44 3 192 4196 PRPF40B,FMNL3,FAM186B
SE_02_155300450 chr12:49633402-49675406 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 450 20 1027 47 3 203 3952 PRPF40B,FMNL3,FAM186B
SE_02_114500754 chr12:49635657-49673837 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 754 15 928 42 3 191 3498 PRPF40B,FMNL3,FAM186B
SE_02_120500987 chr12:49636056-49675809 Sample_02_1205 Brain NB3 987 18 973 47 3 203 3410 PRPF40B,FMNL3,FAM186B
SE_01_006900668 chr12:49636319-49675819 Sample_01_0069 Adrenal gland adrenal-gland 668 9 965 47 3 203 3379 FMNL3,PRPF40B,FAM186B
SE_01_007300726 chr12:49636453-49676538 Sample_01_0073 Coronary artery coronary-artery 726 5 986 51 3 203 3379 FMNL3,PRPF40B,FAM186B
SE_02_118100220 chr12:49636471-49676475 Sample_02_1181 Brain GBM10 220 16 981 50 3 203 3379 PRPF40B,FMNL3,FAM186B
SE_02_117300911 chr12:49636502-49675738 Sample_02_1173 Brain GBM01 911 14 957 46 3 203 3379 PRPF40B,FMNL3,FAM186B
SE_02_101701501 chr12:49636531-49674936 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1501 9 938 45 3 201 3379 PRPF40B,FMNL3,FAM186B
SE_02_120400406 chr12:49636693-49677046 Sample_02_1204 Brain NB2 406 14 985 51 3 204 3337 PRPF40B,FMNL3,FAM186B
SE_02_090600336 chr12:49636768-49676343 Sample_02_0906 Heart left ventricle_DCM_LV1072 336 11 965 49 3 203 3324 PRPF40B,FMNL3,FAM186B
SE_02_002700099 chr12:49636783-49676397 Sample_02_0027 Umbilical vein HUVEC_VEGF_4h 99 5 970 50 3 203 3319 FMNL3,PRPF40B,FAM186B
SE_02_062900372 chr12:49636805-49675083 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 372 6 936 46 3 203 3315 PRPF40B,FMNL3,FAM186B
SE_02_119600562 chr12:49636816-49676193 Sample_02_1196 Brain GBM32 562 19 960 48 3 203 3313 PRPF40B,FMNL3,FAM186B
SE_02_091300535 chr12:49636821-49677156 Sample_02_0913 Heart left ventricle_DCM_LV1304 535 23 983 51 3 204 3311 PRPF40B,FMNL3,FAM186B
SE_02_095000611 chr12:49636839-49675989 Sample_02_0950 Umbilical vein HUVEC_WT 611 12 954 47 3 203 3310 PRPF40B,FMNL3,FAM186B,MCRS1,NCKAP5L,TMBIM6
SE_02_089600416 chr12:49636899-49676246 Sample_02_0896 Heart left ventricle_LV1294 416 15 959 48 3 203 3305 PRPF40B,FMNL3,FAM186B
SE_02_091500146 chr12:49636940-49676458 Sample_02_0915 Heart left ventricle_DCM_LV1371 146 18 965 50 3 203 3294 PRPF40B,FMNL3,FAM186B
SE_02_091700422 chr12:49636942-49676692 Sample_02_0917 Heart left ventricle_DCM_LV1433 422 13 971 51 3 203 3294 PRPF40B,FMNL3,FAM186B
SE_02_090000410 chr12:49637011-49676852 Sample_02_0900 Heart left ventricle_LV1452 410 14 972 51 3 203 3287 PRPF40B,FMNL3,FAM186B
SE_02_084000381 chr12:49637095-49675361 Sample_02_0840 Embryo hNPCs_R1159Q/+ 381 7 930 46 3 203 3283 PRPF40B,FMNL3,FAM186B
SE_02_058500092 chr12:49637115-49675760 Sample_02_0585 Umbilical vein HUVEC 0hour 92 11 935 46 3 203 3283 PRPF40B,FMNL3,FAM186B,MCRS1,NCKAP5L,TMBIM6
SE_02_058000790 chr12:49637120-49675047 Sample_02_0580 Blood HEL_sgSIK3e4 790 7 921 46 3 203 3283 PRPF40B,FMNL3,FAM186B
SE_02_089200749 chr12:49637146-49676327 Sample_02_0892 Heart left ventricle_LV1215 749 13 952 49 3 203 3283 PRPF40B,FMNL3,FAM186B
SE_02_057600794 chr12:49637151-49675000 Sample_02_0576 Blood HEL_sgLKB1e2 794 9 920 45 3 203 3283 PRPF40B,FMNL3,FAM186B
SE_02_090300542 chr12:49637162-49676403 Sample_02_0903 Heart left ventricle_DCM_LV1009 542 13 957 50 3 203 3283 PRPF40B,FMNL3,FAM186B
SE_02_083200028 chr12:49637169-49675671 Sample_02_0832 Umblical vein HUVECs_TNF30min 28 18 933 46 3 203 3283 PRPF40B,FMNL3,FAM186B,MCRS1,NCKAP5L,TMBIM6
SE_02_012800520 chr12:49637176-49674907 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 520 12 915 44 3 201 3283 FMNL3,PRPF40B,FAM186B
SE_02_091100400 chr12:49637177-49676514 Sample_02_0911 Heart left ventricle_DCM_LV1290 400 17 960 50 3 203 3283 PRPF40B,FMNL3,FAM186B
SE_02_057900561 chr12:49637179-49674925 Sample_02_0579 Blood HEL_sgNeg2 561 11 915 44 3 201 3283 PRPF40B,FMNL3,FAM186B
SE_02_083100136 chr12:49637195-49675633 Sample_02_0831 Umblical vein HUVECs_TNF0min 136 8 932 46 3 203 3283 PRPF40B,FMNL3,FAM186B,MCRS1,NCKAP5L,TMBIM6
SE_02_091900300 chr12:49637200-49675756 Sample_02_0919 Heart left ventricle_DCM_LV1532 300 17 933 46 3 203 3283 PRPF40B,FMNL3,FAM186B
SE_02_091000735 chr12:49637203-49676238 Sample_02_0910 Heart left ventricle_DCM_LV1275 735 15 948 48 3 203 3283 PRPF40B,FMNL3,FAM186B
SE_02_089100861 chr12:49637227-49675860 Sample_02_0891 Heart left ventricle_LV1202 861 15 937 47 3 203 3283 PRPF40B,FMNL3,FAM186B
SE_02_090900346 chr12:49637299-49676408 Sample_02_0909 Heart left ventricle_DCM_LV1264 346 17 955 50 3 203 3282 PRPF40B,FMNL3,FAM186B
SE_02_091200543 chr12:49637307-49676530 Sample_02_0912 Heart left ventricle_DCM_LV1300 543 18 958 51 3 203 3282 PRPF40B,FMNL3,FAM186B
SE_02_090400877 chr12:49637378-49676494 Sample_02_0904 Heart left ventricle_DCM_LV1028 877 12 955 50 3 203 3275 PRPF40B,FMNL3,FAM186B
SE_02_147100794 chr12:49637381-49678771 Sample_02_1471 Blood Outgrowth Endothelia BOEC 794 8 996 54 3 206 3274 PRPF40B,FMNL3,FAM186B
SE_02_090200736 chr12:49637391-49675494 Sample_02_0902 Heart left ventricle_LV1558 736 11 925 46 3 203 3272 PRPF40B,FMNL3,FAM186B
SE_02_151800333 chr12:49637444-49675430 Sample_02_1518 Umbilical vein HUVEC_Scr 333 18 924 46 3 203 3259 PRPF40B,FMNL3,FAM186B,MCRS1,NCKAP5L,TMBIM6
SE_02_151900131 chr12:49637470-49675509 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 131 27 924 46 3 203 3255 PRPF40B,FMNL3,FAM186B,MCRS1,NCKAP5L,TMBIM6
SE_02_143700668 chr12:49641744-49682371 Sample_02_1437 Liver LSEC-TNF 668 18 992 53 3 216 2717 PRPF40B,FMNL3,FAM186B
SE_02_090100896 chr12:49643626-49675777 Sample_02_0901 Heart left ventricle_LV1471 896 14 786 42 3 203 2359 PRPF40B,FMNL3,FAM186B
SE_02_146900485 chr12:49643898-49675650 Sample_02_1469 Umbilical Vein HUVEC 485 10 777 42 3 201 2324 PRPF40B,FMNL3,FAM186B,MCRS1,NCKAP5L,TMBIM6
SE_02_152000211 chr12:49644019-49678376 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 211 25 832 48 3 204 2299 PRPF40B,FMNL3,FAM186B,MCRS1,NCKAP5L,TMBIM6
SE_02_075000630 chr12:49644054-49675592 Sample_02_0750 Lymphoma Rec-1_GSI 630 17 769 41 3 201 2292 PRPF40B,FMNL3,FAM186B
SE_02_017600719 chr12:49644064-49676695 Sample_02_0176 Peripheral blood LOUCY 719 3 802 46 3 201 2290 FMNL3,PRPF40B,FAM186B
SE_02_103900461 chr12:49644070-49673756 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 461 7 712 35 3 187 2290 PRPF40B,FMNL3,FAM186B
SE_02_089900324 chr12:49644230-49681221 Sample_02_0899 Heart left ventricle_LV1400 324 21 902 51 3 206 2265 PRPF40B,FMNL3,FAM186B
SE_02_090700665 chr12:49644233-49676507 Sample_02_0907 Heart left ventricle_DCM_LV1223 665 16 797 45 3 193 2265 PRPF40B,FMNL3,FAM186B
SE_02_089801008 chr12:49644249-49675865 Sample_02_0898 Heart left ventricle_LV1356 1008 9 775 42 3 193 2261 PRPF40B,FMNL3,FAM186B
SE_02_091800254 chr12:49644293-49676424 Sample_02_0918 Heart left ventricle_DCM_LV1437 254 16 792 45 3 193 2256 PRPF40B,FMNL3,FAM186B
SE_01_010400712 chr12:49644358-49675948 Sample_01_0104 Lung upper lobe of left lung 712 15 776 42 3 193 2242 PRPF40B,FMNL3,FAM186B,MCRS1,TMBIM6,AQP5
SE_02_089000497 chr12:49644390-49675626 Sample_02_0890 Heart left ventricle_LV1200 497 7 765 41 3 193 2236 PRPF40B,FMNL3,FAM186B
SE_02_112900374 chr12:49644421-49675401 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 374 18 762 41 3 188 2223 PRPF40B,FMNL3,FAM186B
SE_02_118700477 chr12:49644592-49676053 Sample_02_1187 Brain GBM16 477 9 773 41 3 181 2189 PRPF40B,FMNL3,FAM186B
SE_02_090500645 chr12:49644753-49676133 Sample_02_0905 Heart left ventricle_DCM_LV1033 645 11 773 42 3 180 2165 FMNL3,FAM186B,PRPF40B
SE_02_108000499 chr12:49644759-49675584 Sample_02_1080 Muscle JR1 shCtrl 499 10 758 40 3 180 2163 FMNL3,FAM186B,PRPF40B
SE_02_091600240 chr12:49644773-49676440 Sample_02_0916 Heart left ventricle_DCM_LV1392 240 13 784 44 3 180 2162 FMNL3,FAM186B,PRPF40B
SE_02_119100739 chr12:49644835-49675545 Sample_02_1191 Brain GBM25 739 13 757 39 3 180 2152 FMNL3,FAM186B,PRPF40B
SE_02_082700414 chr12:49644968-49679764 Sample_02_0827 Stomach normal gastric 414 6 842 49 3 185 2124 FMNL3,FAM186B,PRPF40B
SE_01_009000349 chr12:49645264-49676684 Sample_01_0090 Lung upper-lobe-of-left-lung 349 4 778 44 3 180 2076 FMNL3,PRPF40B,FAM186B
SE_02_089700755 chr12:49645282-49676414 Sample_02_0897 Heart left ventricle_LV1325 755 14 772 43 3 180 2076 FMNL3,FAM186B,PRPF40B
SE_02_134500532 chr12:49645297-49675658 Sample_02_1345 Leukophereses leukophereses_p358 532 13 748 39 3 180 2072 FMNL3,FAM186B,PRPF40B
SE_02_088901122 chr12:49645326-49675810 Sample_02_0889 Heart left ventricle_LV1183 1122 8 752 40 3 180 2066 FMNL3,FAM186B,PRPF40B
SE_02_091400286 chr12:49645364-49676293 Sample_02_0914 Heart left ventricle_DCM_LV1342 286 18 763 41 3 180 2058 FMNL3,FAM186B,PRPF40B
SE_02_088800585 chr12:49646488-49676837 Sample_02_0888 Heart left ventricle_LV1160 585 11 751 44 3 180 1900 FMNL3,FAM186B,PRPF40B
SE_00_004600690 chr12:49646878-49675593 Sample_00_0046 Heart right ventricle_34y 690 12 704 39 3 180 1811 FMNL3,FAM186B,PRPF40B
SE_02_037600197 chr12:49646894-49659859 Sample_02_0376 Skeletal muscle RMS237 197 2 307 14 0 91 1497 FMNL3,PRPF40B,FAM186B
SE_02_088700828 chr12:49646952-49675604 Sample_02_0887 Heart left ventricle_LV1121 828 6 703 39 3 180 1793 FMNL3,FAM186B,PRPF40B
SE_02_062000358 chr12:49647020-49674835 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 358 9 683 37 3 173 1775 FMNL3,FAM186B,PRPF40B,MCRS1,NCKAP5L,TMBIM6
SE_02_092000315 chr12:49647020-49675802 Sample_02_0920 Heart left ventricle_DCM_LV1535 315 13 707 40 3 180 1775 FMNL3,FAM186B,PRPF40B
SE_00_005200833 chr12:49647038-49675481 Sample_00_0052 Heart left ventricle 3y 833 10 700 38 3 180 1773 FMNL3,FAM186B,PRPF40B
SE_02_156901007 chr12:49647096-49675128 Sample_02_1569 Endothelial Endothelial cells 1007 4 692 38 3 180 1763 FMNL3,FAM186B,PRPF40B
SE_02_089500419 chr12:49647138-49675697 Sample_02_0895 Heart left ventricle_LV1259 419 11 702 38 3 180 1753 FMNL3,FAM186B,PRPF40B
SE_02_112500259 chr12:49647865-49674685 Sample_02_1125 Adipose visceral adipose_CS_VC06 259 9 657 35 3 170 1593 FMNL3,FAM186B,PRPF40B
SE_02_104200437 chr12:49653159-49674580 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 437 13 532 29 3 134 872 FMNL3,FAM186B,PRPF40B
SE_01_002600464 chr12:49655404-49675256 Sample_01_0026 Umbilical vein endothelial-cell-of-umbilical-vein 464 3 496 28 3 126 606 FMNL3,PRPF40B,FAM186B
SE_02_002600510 chr12:49655884-49675277 Sample_02_0026 Blood CD4donorE 510 9 485 28 3 117 606 FMNL3,PRPF40B
SE_02_013200379 chr12:49659618-49676523 Sample_02_0132 Lung 1015_CL 379 1 430 30 3 89 309 FMNL3,PRPF40B
SE_02_013100344 chr12:49660183-49676341 Sample_02_0131 Lung 1015_PT 344 1 412 28 3 89 309 FMNL3,PRPF40B
SE_01_002000343 chr12:49660321-49677404 Sample_01_0020 Blood B-cell 343 1 431 30 3 90 309 FMNL3,PRPF40B
SE_02_010300531 chr12:49660865-49675837 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 531 3 378 25 3 86 309 FMNL3,PRPF40B
SE_01_004400707 chr12:49660965-49675377 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 707 2 368 24 3 86 309 FMNL3,PRPF40B
SE_00_000900534 chr12:49661047-49675270 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 534 2 362 23 3 86 309 FMNL3,PRPF40B
SE_02_036400557 chr12:49661223-49676329 Sample_02_0364 Skeletal muscle CTR 557 2 386 26 3 86 309 FMNL3,PRPF40B
SE_00_003300522 chr12:49661226-49675858 Sample_00_0033 Psoas muscle psoas-muscle_3y 522 2 372 24 3 86 309 FMNL3,PRPF40B
SE_02_037300343 chr12:49661324-49675750 Sample_02_0373 Skeletal muscle RMS206 343 2 365 23 3 86 309 FMNL3,PRPF40B
SE_00_000300952 chr12:49661820-49675656 Sample_00_0003 Adrenal gland adrenal-gland_97d 952 2 353 23 3 85 296 FMNL3,PRPF40B
SE_02_011300511 chr12:49661999-49675400 Sample_02_0113 Connective tissue HT1080_DOX5d 511 2 345 23 3 78 262 FMNL3,PRPF40B
SE_02_011200639 chr12:49662043-49675529 Sample_02_0112 Connective tissue HT1080_untreated 639 3 347 23 3 76 256 FMNL3,PRPF40B
SE_02_014700266 chr12:49662734-49672515 Sample_02_0147 Blood CD4_T_cells 266 3 239 15 2 48 211 FMNL3,PRPF40B
SE_02_038600075 chr12:49663309-49672748 Sample_02_0386 Lymph node CD19+_B_cells_FL1-2 75 5 223 15 2 38 211 FMNL3,PRPF40B
Genomic distribution of SEs associated with PRPF40B
Genome Browser

The strength of the tissue affected by the gene

Expression of PRPF40B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)