Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000115825 |
| Gene: | PRKD3 | Gene type: | protein_coding |
| Strand: | - | External links: |
|
| Genomic region: | chr2:37250502-37324833 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_080800471 | chr2:37271906-37327766 |
Sample_02_0808 | Ovary | RMG1_ARID1A KO | 471 | 40 | 1706 | 242 | 8 | 181 | 538 | PRKD3,QPCT,NDUFAF7,CEBPZ |
| SE_01_006400602 | chr2:37282775-37339688 |
Sample_01_0064 | Brain: derived from metastatic site: supra-orbital area | SK-N-MC | 602 | 8 | 1780 | 256 | 8 | 158 | 235 | PRKD3,QPCT |
| SE_02_116200345 | chr2:37285365-37351847 |
Sample_02_1162 | Stomach | YCC11 | 345 | 28 | 2078 | 311 | 12 | 203 | 392 | QPCT,PRKD3 |
| SE_02_058800191 | chr2:37291241-37339232 |
Sample_02_0588 | Cervix | HeLa Kyoto_untreated | 191 | 18 | 1506 | 222 | 4 | 140 | 121 | PRKD3,QPCT |
| SE_02_140200002 | chr2:37300724-37356707 |
Sample_02_1402 | Blood | MM.1S_GNE-781 | 2 | 18 | 1708 | 239 | 7 | 174 | 296 | QPCT,PRKD3 |
| SE_02_075500443 | chr2:37301382-37325715 |
Sample_02_0755 | Embryo | ES-derived progenitors_DE FOXA2 -/- | 443 | 6 | 762 | 102 | 2 | 94 | 88 | PRKD3,QPCT |
| SE_02_003801281 | chr2:37301574-37325738 |
Sample_02_0038 | Embryo | DE | 1281 | 6 | 757 | 100 | 2 | 94 | 88 | PRKD3,QPCT |
| SE_02_075200471 | chr2:37303281-37325951 |
Sample_02_0752 | Embryo | ES-derived progenitors_DE_wild type | 471 | 5 | 691 | 94 | 2 | 94 | 88 | PRKD3,QPCT |
| SE_02_103601122 | chr2:37304475-37325397 |
Sample_02_1036 | Mammary gland | HCC70_XY018 | 1122 | 4 | 647 | 89 | 2 | 94 | 88 | PRKD3,QPCT |
| SE_02_044400901 | chr2:37305162-37327385 |
Sample_02_0444 | Bone | osteosarcoma tumor P10 | 901 | 7 | 677 | 89 | 2 | 95 | 88 | PRKD3,QPCT |
| SE_00_002400885 | chr2:37305324-37325787 |
Sample_00_0024 | Embryo | mesendoderm | 885 | 3 | 625 | 85 | 2 | 84 | 88 | PRKD3,QPCT |
| SE_02_058900232 | chr2:37305817-37351325 |
Sample_02_0589 | Cervix | HeLa Kyoto_Luci siRNA | 232 | 16 | 1382 | 207 | 7 | 152 | 251 | QPCT,PRKD3 |
| SE_02_122300037 | chr2:37306292-37351299 |
Sample_02_1223 | Bone marrow | KMS28BM | 37 | 8 | 1365 | 204 | 7 | 152 | 251 | QPCT,PRKD3 |
| SE_02_018400168 | chr2:37309165-37327836 |
Sample_02_0184 | Skin | SKMEL30 | 168 | 3 | 560 | 78 | 2 | 88 | 88 | PRKD3,QPCT |
| SE_02_035900291 | chr2:37309209-37327727 |
Sample_02_0359 | Colon | Colo741 | 291 | 1 | 556 | 77 | 2 | 87 | 88 | PRKD3,QPCT |
| SE_02_140300003 | chr2:37309331-37337843 |
Sample_02_1403 | Blood | MM.1S_A-485/GNE-781 | 3 | 21 | 879 | 123 | 3 | 93 | 88 | PRKD3,QPCT |
| SE_02_139600032 | chr2:37311729-37348800 |
Sample_02_1396 | Colon | COLO320HSR_DMSO | 32 | 10 | 1094 | 172 | 5 | 133 | 251 | QPCT,PRKD3 |
| SE_02_018500341 | chr2:37312208-37327930 |
Sample_02_0185 | Skin | UACC257 | 341 | 2 | 452 | 69 | 2 | 81 | 88 | PRKD3,QPCT |
| SE_02_156001398 | chr2:37317702-37327379 |
Sample_02_1560 | Gastrointestinal Stromal | GIST-9_PDGFRA e18 | 1398 | 3 | 259 | 39 | 1 | 59 | 0 | QPCT,PRKD3 |
| SE_02_064502156 | chr2:37323389-37325739 |
Sample_02_0645 | Tracheobronchial epithelial | HTBE_H1N1_18h | 2156 | 1 | 66 | 13 | 0 | 28 | 0 | QPCT,PRKD3 |
| SE_02_103501269 | chr2:37324098-37325405 |
Sample_02_1035 | Mammary gland | HCC70_Vehicle | 1269 | 1 | 32 | 6 | 0 | 21 | 0 | QPCT,PRKD3 |
Genomic distribution of SEs associated with PRKD3