SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000132356
Gene: PRKAA1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr5:40759379-40798374 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103500220 chr5:40762003-40805859 Sample_02_1035 Mammary gland HCC70_Vehicle 220 19 1027 85 4 109 566 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_076400442 chr5:40772289-40800346 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 442 6 693 59 3 57 277 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_017000423 chr5:40772792-40800479 Sample_02_0170 Prostate LNCaP_R1881_DOX 423 4 687 59 3 57 277 PRKAA1,TTC33,CARD6,SNORD72,RPL37
SE_02_051100035 chr5:40773057-40800438 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 35 6 682 58 3 57 277 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_075400623 chr5:40773181-40802784 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 623 8 716 60 3 61 277 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_066400411 chr5:40773467-40800486 Sample_02_0664 Prostate LNCaP_DMSO 411 6 670 57 3 57 277 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_070900733 chr5:40774021-40798218 Sample_02_0709 Pancreas hT85_organoid 733 6 583 50 3 37 219 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_071800286 chr5:40774571-40798217 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 286 9 573 49 3 35 218 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_032700796 chr5:40775142-40799916 Sample_02_0327 Liver hepatocytes_d6 796 4 609 54 3 51 239 PRKAA1,TTC33,CARD6,SNORD72,RPL37
SE_02_032500910 chr5:40776070-40799517 Sample_02_0325 Liver hepatocytes_d1 910 5 582 53 2 47 202 PRKAA1,TTC33,CARD6,SNORD72,RPL37
SE_02_028500313 chr5:40778575-40803625 Sample_02_0285 Liver HuH7_untreat 313 4 601 52 2 48 152 PRKAA1,TTC33,CARD6,SNORD72,RPL37
SE_02_032601048 chr5:40778837-40799406 Sample_02_0326 Liver hepatocytes_d3 1048 4 513 46 2 41 152 PRKAA1,TTC33,CARD6,SNORD72,RPL37
SE_02_028600696 chr5:40779915-40802925 Sample_02_0286 Liver HuH7_IL-1alpha_1h 696 6 569 48 2 48 152 PRKAA1,TTC33,CARD6,SNORD72,RPL37
SE_02_075700927 chr5:40783325-40808426 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 927 11 645 50 2 44 152 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_050900092 chr5:40791138-40800132 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 92 5 231 20 1 36 152 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_051000124 chr5:40791143-40800536 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 124 4 245 21 1 37 152 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_04_000200433 chr5:40791401-40804629 Sample_04_0002 Blood cold shocked K562 433 2 309 26 1 41 152 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_067300629 chr5:40791782-40800506 Sample_02_0673 Prostate LNCAP_FA 629 5 230 18 0 36 152 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_113000709 chr5:40791949-40804084 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 709 5 286 22 0 40 152 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_111600452 chr5:40792081-40804364 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 452 5 289 21 0 40 152 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_04_000100696 chr5:40795900-40813490 Sample_04_0001 Blood heat shocked K562 696 2 457 32 1 37 152 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_054500804 chr5:40796646-40804299 Sample_02_0545 Bone marrow K562 WT 804 2 181 11 0 36 152 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
SE_02_077400303 chr5:40796932-40802268 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 303 3 135 7 0 35 152 PRKAA1,TTC33,RPL37,LOC100506548,CARD6,SNORD72
Genomic distribution of SEs associated with PRKAA1
Genome Browser

The strength of the tissue affected by the gene

Expression of PRKAA1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)