SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000149923
Gene: PPP4C Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:30075978-30085376 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_127900617 chr16:30050915-30091087 Sample_02_1279 Bone Mesenchymal stem cells 617 7 1077 55 2 245 3264 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_005500569 chr16:30050972-30091025 Sample_02_0055 Lung IMR-90_Nutlin-3a 569 4 1074 54 2 244 3243 ALDOA,PPP4C,TBX6,DOC2A,C16ORF92,MAPK3,YPEL3,LOC100271831,FAM57B,GDPD3
SE_02_005400524 chr16:30051049-30091061 Sample_02_0054 Lung IMR-90_DMSO_1 524 4 1072 54 2 244 3254 ALDOA,PPP4C,TBX6,DOC2A,C16ORF92,MAPK3,YPEL3,LOC100271831,FAM57B,GDPD3
SE_02_116700456 chr16:30052549-30089862 Sample_02_1167 Biliary H69_TGF Vehicle_1 456 5 1017 47 2 238 3123 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_110700358 chr16:30054509-30089141 Sample_02_1107 Brain SK-N-AS 358 11 953 44 2 229 2840 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_086900580 chr16:30054672-30089933 Sample_02_0869 Fibroblast VH10_NO_UV 580 8 971 46 2 229 2893 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_046600305 chr16:30055125-30089894 Sample_02_0466 Adipose visceral adipocytes 305 16 960 44 2 225 2787 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_076600784 chr16:30055609-30089928 Sample_02_0766 Ovary PEO1 784 8 955 44 2 221 2714 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_056800090 chr16:30055732-30090002 Sample_02_0568 Mammary gland MCF7L_E2_4h 90 8 954 44 2 221 2714 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_125800460 chr16:30056616-30089896 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 460 7 935 43 2 221 2714 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_036800223 chr16:30057038-30088544 Sample_02_0368 Skeletal muscle NS134 223 3 884 40 2 198 2511 ALDOA,PPP4C,TBX6,DOC2A,C16ORF92,MAPK3,YPEL3,LOC100271831,FAM57B,GDPD3
SE_02_074600409 chr16:30058149-30085768 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 409 10 764 34 2 170 2062 PPP4C,ALDOA,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3,TBX6
SE_02_155300582 chr16:30058168-30086668 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 582 8 800 36 2 187 2327 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_046500274 chr16:30060108-30086322 Sample_02_0465 Adipose subcutaneous adipocytes 274 11 732 33 2 180 2227 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_054000187 chr16:30060767-30086653 Sample_02_0540 Brain SK-N-BE_2_-C_PI3K_engineered 187 8 739 33 2 181 2325 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_138100107 chr16:30061073-30086819 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 107 10 742 33 2 181 2370 ALDOA,PPP4C,TBX6,YPEL3,GDPD3,C16ORF92,FAM57B,DOC2A,MAPK3
SE_02_032400250 chr16:30062961-30079297 Sample_02_0324 Colon SW48 250 2 452 18 0 110 1385 ALDOA,PPP4C,YPEL3,C16ORF92,TBX6,MAPK3,LOC100271831,FAM57B,GDPD3
SE_02_090600597 chr16:30063002-30079213 Sample_02_0906 Heart left ventricle_DCM_LV1072 597 7 449 18 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_01_003600562 chr16:30063068-30091227 Sample_01_0036 Cervix HeLa-S3 562 4 813 39 1 217 2895 ALDOA,PPP4C,TBX6,YPEL3,C16ORF92,MAPK3,LOC100271831,FAM57B,GDPD3,C16orf92,FA57B,INO80E,APK3,SEZ6L2,TAOK2
SE_02_142700353 chr16:30063128-30085651 Sample_02_1427 Shoulder fibroblast_343 353 7 656 30 1 158 2041 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_142800502 chr16:30063154-30086203 Sample_02_1428 Shoulder fibroblast_316 502 6 671 31 1 168 2192 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,DOC2A,MAPK3,GDPD3
SE_01_006900327 chr16:30063166-30086470 Sample_01_0069 Adrenal gland adrenal-gland 327 4 683 32 1 172 2267 ALDOA,PPP4C,TBX6,YPEL3,C16ORF92,MAPK3,LOC100271831,FAM57B,GDPD3
SE_02_005600667 chr16:30063232-30078918 Sample_02_0056 Mammary gland HMEC 667 3 441 18 0 110 1385 ALDOA,PPP4C,YPEL3,C16ORF92,TBX6,MAPK3,LOC100271831,FAM57B,GDPD3
SE_02_081900265 chr16:30063236-30089893 Sample_02_0819 Ovary Mucinous ovarian cancer 265 5 782 37 1 210 2714 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,DOC2A,MAPK3,GDPD3
SE_02_024400328 chr16:30063237-30089893 Sample_02_0244 Foreskin foreskin_D11 328 7 782 37 1 210 2714 ALDOA,PPP4C,TBX6,YPEL3,C16ORF92,MAPK3,LOC100271831,FAM57B,GDPD3
SE_02_090701110 chr16:30063259-30079202 Sample_02_0907 Heart left ventricle_DCM_LV1223 1110 6 445 18 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_091301288 chr16:30063273-30079386 Sample_02_0913 Heart left ventricle_DCM_LV1304 1288 6 450 18 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_01_003900347 chr16:30063277-30079948 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 347 4 463 19 0 110 1385 ALDOA,PPP4C,YPEL3,C16ORF92,TBX6,MAPK3,LOC100271831,FAM57B,GDPD3,FA57B,HIRIP3,INO80E,APK3,AZ,TAOK2
SE_02_158000286 chr16:30063290-30078723 Sample_02_1580 Renal 786-O 286 6 435 18 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_157900339 chr16:30063296-30090029 Sample_02_1579 Renal 786-M1A 339 5 784 37 1 210 2714 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,DOC2A,MAPK3,GDPD3
SE_02_090400569 chr16:30063298-30085582 Sample_02_0904 Heart left ventricle_DCM_LV1028 569 6 650 30 1 158 2040 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_001500162 chr16:30063304-30089385 Sample_02_0015 Liver HepG2_shNS 162 4 767 35 1 210 2705 ALDOA,PPP4C,TBX6,YPEL3,C16ORF92,MAPK3,LOC100271831,FAM57B,GDPD3
SE_02_061500422 chr16:30063308-30085911 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 422 6 660 30 1 162 2094 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,DOC2A,MAPK3,GDPD3
SE_02_091100754 chr16:30063314-30079366 Sample_02_0911 Heart left ventricle_DCM_LV1290 754 4 450 18 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_088900702 chr16:30063338-30085966 Sample_02_0889 Heart left ventricle_LV1183 702 5 660 30 1 162 2113 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,DOC2A,MAPK3,GDPD3
SE_02_072700974 chr16:30063386-30090836 Sample_02_0727 Fetal lung IMR90_Etoposide 974 4 802 38 1 214 2776 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,DOC2A,MAPK3,GDPD3
SE_02_105000628 chr16:30063402-30089974 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 628 3 782 37 1 210 2714 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,DOC2A,MAPK3,GDPD3
SE_02_057400329 chr16:30063406-30090889 Sample_02_0574 Blood MOLM-13_sgNeg2 329 6 803 38 1 215 2796 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,DOC2A,MAPK3,GDPD3
SE_02_034700307 chr16:30063411-30087902 Sample_02_0347 Blood AML11 307 3 726 35 1 187 2441 ALDOA,PPP4C,TBX6,YPEL3,C16ORF92,MAPK3,LOC100271831,FAM57B,GDPD3
SE_02_090900765 chr16:30063429-30079248 Sample_02_0909 Heart left ventricle_DCM_LV1264 765 5 445 18 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_057800343 chr16:30063439-30090123 Sample_02_0578 Blood MOLM-13_sgSIK3e4 343 5 787 37 1 212 2714 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,DOC2A,MAPK3,GDPD3
SE_02_012800413 chr16:30063450-30089782 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 413 6 772 35 1 210 2714 ALDOA,PPP4C,TBX6,YPEL3,C16ORF92,MAPK3,LOC100271831,FAM57B,GDPD3
SE_02_113901062 chr16:30063456-30078566 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 1062 2 426 14 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_146900372 chr16:30063464-30078667 Sample_02_1469 Umbilical Vein HUVEC 372 4 432 16 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_113800860 chr16:30063491-30090166 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 860 3 785 36 1 213 2714 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,DOC2A,MAPK3,GDPD3
SE_02_147200243 chr16:30063524-30078691 Sample_02_1472 Fetal lung IMR-90 243 3 431 16 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_076100464 chr16:30063541-30078226 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 464 3 415 14 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_145200420 chr16:30063551-30078701 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 420 3 431 17 0 110 1385 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_136500243 chr16:30063561-30081439 Sample_02_1365 Pancreas AsPC1-untreated 243 5 511 20 0 117 1453 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_146000320 chr16:30063572-30078673 Sample_02_1460 Blood Mutz-3 320 4 431 16 0 110 1383 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_01_011700371 chr16:30063586-30078413 Sample_01_0117 Lung fibroblast of lung 371 2 420 14 0 110 1380 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,DOC2A,TBX6,MAPK3,GDPD3
SE_02_076000434 chr16:30063604-30078333 Sample_02_0760 Ovary BIN-67_SMARCA4 434 3 418 14 0 110 1379 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,TBX6,MAPK3,GDPD3
SE_02_145400434 chr16:30063616-30078445 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 434 3 420 14 0 110 1375 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,TBX6,MAPK3,GDPD3
SE_02_145100399 chr16:30063715-30078648 Sample_02_1451 Arter pulmonary arterial smooth muscle cells_PAH1_sictrl 399 2 426 16 0 109 1351 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,TBX6,MAPK3,GDPD3
SE_02_132001086 chr16:30065708-30078119 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1086 2 364 14 0 87 970 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,TBX6,MAPK3,GDPD3
SE_02_095001458 chr16:30065713-30078465 Sample_02_0950 Umbilical vein HUVEC_WT 1458 5 375 14 0 86 970 PPP4C,ALDOA,C16ORF92,FAM57B,YPEL3,TBX6,MAPK3,GDPD3
SE_02_007300088 chr16:30066941-30085402 Sample_02_0073 Other 90-8TL_DMSO 88 6 556 29 1 117 1427 ALDOA,PPP4C,YPEL3,C16ORF92,TBX6,MAPK3,LOC100271831,FAM57B,GDPD3
SE_02_082700436 chr16:30067689-30089115 Sample_02_0827 Stomach normal gastric 436 5 649 33 1 143 1909 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,MAPK3,GDPD3
SE_02_074300178 chr16:30070027-30089303 Sample_02_0743 Embryo ES derived mesoderm_day2 178 7 577 30 1 119 1622 ALDOA,PPP4C,TBX6,C16ORF92,FAM57B,YPEL3,MAPK3,GDPD3
Genomic distribution of SEs associated with PPP4C
Genome Browser

The strength of the tissue affected by the gene

Expression of PPP4C

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)