SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000005882
Gene: PDK2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:50094737-50112152 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_009400368 chr17:50057906-50113855 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 368 9 1571 158 2 304 4599 SAMD14,PDK2,ITGA3,PPP1R9B,LOC284080
SE_02_088900528 chr17:50080523-50117733 Sample_02_0889 Heart left ventricle_LV1183 528 6 1059 113 0 195 3273 SAMD14,PDK2,ITGA3,SGCA,PPP1R9B,LOC284080
SE_02_154101161 chr17:50082267-50112607 Sample_02_1541 Nasopharyngeal HNE1 1161 11 868 99 0 139 2521 SAMD14,PDK2,ITGA3,PPP1R9B,LOC284080
SE_02_074700590 chr17:50088795-50115049 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 590 10 765 91 0 143 2609 SAMD14,PDK2,ITGA3,PPP1R9B,LOC284080
SE_02_114500626 chr17:50091075-50122348 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 626 11 866 89 2 164 2734 PDK2,SAMD14,SGCA,PPP1R9B,ITGA3,LOC284080
SE_02_036700331 chr17:50093669-50105027 Sample_02_0367 Skeletal muscle NS129 331 1 323 38 0 37 542 PDK2,PPP1R9B,SAMD14,ITGA3
SE_01_008801228 chr17:50093675-50113544 Sample_01_0088 Tibial nerve tibial-nerve 1228 2 573 69 0 108 2062 SAMD14,PDK2,PPP1R9B,ITGA3
SE_02_036800241 chr17:50093816-50104288 Sample_02_0368 Skeletal muscle NS134 241 1 299 36 0 37 542 PDK2,PPP1R9B,SAMD14,ITGA3
SE_01_009700305 chr17:50093855-50115281 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 305 1 614 72 0 131 2244 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_01_007600645 chr17:50093860-50114030 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 645 1 578 69 0 117 2111 SAMD14,PDK2,PPP1R9B,ITGA3
SE_01_008100409 chr17:50093989-50116199 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 409 2 645 72 0 146 2423 SAMD14,PDK2,PPP1R9B,SGCA,ITGA3
SE_01_007900753 chr17:50094003-50124420 Sample_01_0079 Peyers patch Peyers-patch 753 3 849 80 2 168 2835 SAMD14,PDK2,PPP1R9B,ITGA3,HILS1,SGCA
SE_00_002001363 chr17:50094061-50112671 Sample_00_0020 Large intestine large-intestine_108d 1363 3 531 66 0 108 1923 SAMD14,PDK2,PPP1R9B,ITGA3
SE_01_007100287 chr17:50094084-50112752 Sample_01_0071 Pancreas body-of-pancreas 287 3 537 67 0 108 1943 SAMD14,PDK2,PPP1R9B,ITGA3
SE_00_003601420 chr17:50094109-50112750 Sample_00_0036 Small intestine small-intestine_108days 1420 4 535 67 0 108 1941 SAMD14,PDK2,PPP1R9B,ITGA3
SE_00_002100259 chr17:50094193-50114337 Sample_00_0021 Lung lung_3y 259 4 575 68 0 129 2183 SAMD14,PDK2,PPP1R9B,ITGA3
SE_00_000301490 chr17:50094201-50129307 Sample_00_0003 Adrenal gland adrenal-gland_97d 1490 4 958 86 2 194 2903 SAMD14,PDK2,PPP1R9B,ITGA3,HILS1,SGCA
SE_02_090400705 chr17:50094217-50117746 Sample_02_0904 Heart left ventricle_DCM_LV1028 705 6 665 72 0 159 2566 PDK2,SAMD14,SGCA,PPP1R9B,ITGA3,LOC284080
SE_00_003200294 chr17:50094227-50113980 Sample_00_0032 Psoas muscle psoas-muscle_30y 294 3 567 68 0 117 2103 SAMD14,PDK2,PPP1R9B,ITGA3
SE_01_009800392 chr17:50094346-50115545 Sample_01_0098 Heart left ventricle_51y 392 4 605 70 0 132 2267 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_00_003400248 chr17:50094351-50115220 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 248 4 598 70 0 131 2244 SAMD14,PDK2,PPP1R9B,ITGA3
SE_02_117301061 chr17:50094355-50117781 Sample_02_1173 Brain GBM01 1061 10 660 71 0 159 2579 PDK2,SAMD14,SGCA,PPP1R9B,ITGA3,LOC284080
SE_02_090200337 chr17:50094467-50115013 Sample_02_0902 Heart left ventricle_LV1558 337 6 586 69 0 130 2244 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_00_003300510 chr17:50094997-50114011 Sample_00_0033 Psoas muscle psoas-muscle_3y 510 3 541 64 0 115 2043 SAMD14,PDK2,PPP1R9B,ITGA3
SE_02_046500501 chr17:50095299-50118448 Sample_02_0465 Adipose subcutaneous adipocytes 501 8 644 67 0 150 2562 PDK2,SAMD14,SGCA,PPP1R9B,ITGA3,LOC284080
SE_00_002900395 chr17:50095333-50124304 Sample_00_0029 Ovary ovary 395 7 803 74 2 153 2656 SAMD14,PDK2,PPP1R9B,ITGA3,HILS1,SGCA
SE_02_090300991 chr17:50097434-50116150 Sample_02_0903 Heart left ventricle_DCM_LV1009 991 8 544 59 0 123 1932 PDK2,SAMD14,SGCA,PPP1R9B,ITGA3,LOC284080
SE_02_089000858 chr17:50097465-50114145 Sample_02_0890 Heart left ventricle_LV1200 858 4 477 56 0 98 1654 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_088800728 chr17:50097466-50114205 Sample_02_0888 Heart left ventricle_LV1160 728 4 479 56 0 99 1666 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_112200200 chr17:50097476-50112920 Sample_02_1122 Adipose visceral adipose_CS_H507 200 5 445 54 0 83 1496 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_00_004600350 chr17:50097509-50117735 Sample_00_0046 Heart right ventricle_34y 350 12 570 60 0 133 2073 PDK2,SAMD14,SGCA,PPP1R9B,ITGA3,LOC284080
SE_02_092001074 chr17:50097634-50114134 Sample_02_0920 Heart left ventricle_DCM_LV1535 1074 7 472 55 0 96 1622 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_089300808 chr17:50097687-50114229 Sample_02_0893 Heart left ventricle_LV1226 808 7 475 55 0 97 1629 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_088701154 chr17:50097721-50114725 Sample_02_0887 Heart left ventricle_LV1121 1154 8 487 58 0 105 1704 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_089100893 chr17:50097786-50115070 Sample_02_0891 Heart left ventricle_LV1202 893 8 499 58 0 105 1702 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_089400614 chr17:50097929-50114130 Sample_02_0894 Heart left ventricle_LV1248 614 7 465 54 0 96 1598 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_089701068 chr17:50098787-50114037 Sample_02_0897 Heart left ventricle_LV1325 1068 4 446 54 0 90 1569 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_00_005200441 chr17:50098910-50115036 Sample_00_0052 Heart left ventricle 3y 441 7 473 56 0 104 1702 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_00_005700225 chr17:50099236-50114635 Sample_00_0057 Heart right ventricle 3y 225 13 450 53 0 98 1702 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_074600423 chr17:50099879-50113989 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 423 6 412 48 0 84 1563 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_092200956 chr17:50099881-50124060 Sample_02_0922 Heart fetal heart_PCW10_12434 956 6 674 59 2 135 2225 PDK2,SAMD14,SGCA,PPP1R9B,ITGA3,LOC284080,HILS1
SE_01_002300568 chr17:50100798-50113601 Sample_01_0023 Embryo cardiac-muscle-cell 568 3 383 46 0 75 1520 SAMD14,PDK2,PPP1R9B,ITGA3
SE_02_074500633 chr17:50100837-50113670 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 633 4 383 46 0 75 1520 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_089500800 chr17:50101177-50113947 Sample_02_0895 Heart left ventricle_LV1259 800 4 379 46 0 79 1558 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_074400852 chr17:50101292-50112661 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 852 4 329 43 0 75 1376 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_01_010600406 chr17:50101353-50113052 Sample_01_0106 Adrenal gland adrenal gland 54y 406 4 342 43 0 75 1465 PDK2,SAMD14,PPP1R9B,ITGA3,LOC284080
SE_02_104801712 chr17:50101831-50117737 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1712 7 448 47 0 124 2022 PDK2,SAMD14,SGCA,PPP1R9B,ITGA3,LOC284080
SE_02_036800625 chr17:50106208-50115795 Sample_02_0368 Skeletal muscle NS134 625 1 275 30 0 77 1574 SAMD14,PDK2,PPP1R9B
SE_02_036700545 chr17:50106430-50115673 Sample_02_0367 Skeletal muscle NS129 545 1 265 29 0 75 1531 SAMD14,PDK2,PPP1R9B
Genomic distribution of SEs associated with PDK2
Genome Browser

The strength of the tissue affected by the gene

Expression of PDK2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)