SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000242419
Gene: PCDHGC4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:141484997-141512979 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_119300034 chr5:141474924-141497712 Sample_02_1193 Brain GBM27 34 1 493 53 2 99 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_085700929 chr5:141475010-141490056 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 929 1 320 37 2 99 1140 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_121200008 chr5:141475302-141497499 Sample_02_1212 Brain GBM30 8 1 485 53 2 99 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_117700485 chr5:141475425-141490870 Sample_02_1177 Brain GBM05 485 1 334 38 2 98 1275 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_085500040 chr5:141475445-141497858 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 40 1 486 53 2 98 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_117900041 chr5:141475498-141497094 Sample_02_1179 Brain GBM08 41 1 469 53 2 98 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
Genomic distribution of SEs associated with PCDHGC4
Genome Browser

The strength of the tissue affected by the gene

Expression of PCDHGC4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)