SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000111696
Gene: NT5DC3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:103770453-103841234 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_143201355 chr12:103768739-103808388 Sample_02_1432 Bone A673 STAG2 WT 1355 13 1124 206 5 60 1209 NT5DC3
SE_02_030100194 chr12:103771512-103871606 Sample_02_0301 Neuroblastoma GIMEN 194 14 2771 539 9 116 1778 GNN,NT5DC3
SE_02_118600205 chr12:103772513-103860078 Sample_02_1186 Brain GBM15 205 21 2427 472 8 104 1565 NT5DC3,TTC41P
SE_02_155100133 chr12:103772539-103852385 Sample_02_1551 Gastrointestinal Stromal MaMel 133 32 2209 414 7 99 1518 NT5DC3,TTC41P
SE_02_126900635 chr12:103779528-103824804 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 635 8 1271 228 4 59 511 NT5DC3
SE_02_034600217 chr12:103794074-103809129 Sample_02_0346 Blood AML10 217 5 442 57 1 22 197 NT5DC3
SE_02_147500760 chr12:103794574-103805600 Sample_02_1475 Bone CHLA-25 760 5 337 49 1 15 102 NT5DC3
SE_02_077101183 chr12:103797562-103808351 Sample_02_0771 Ovary OVCA429_shGRHL2 1183 8 290 31 1 15 133 NT5DC3
SE_02_031700240 chr12:103797809-103861619 Sample_02_0317 Neuroblastoma GICAN 240 6 1740 320 4 65 572 GNN,NT5DC3
SE_01_008600456 chr12:103797874-103870545 Sample_01_0086 Thoracic aorta thoracic-aorta 456 9 1982 370 5 70 701 GNN,NT5DC3
SE_02_077000903 chr12:103798214-103839462 Sample_02_0770 Ovary OVCA429_shLuc 903 18 1168 184 2 39 179 NT5DC3
SE_01_007000406 chr12:103798527-103870434 Sample_01_0070 Ascending aorta ascending-aorta 406 11 1966 369 5 70 677 GNN,NT5DC3
SE_01_009300590 chr12:103798610-103870046 Sample_01_0093 Aorta ascending aorta 590 19 1956 369 5 68 646 NT5DC3,TTC41P
SE_02_018500333 chr12:103798669-103806447 Sample_02_0185 Skin UACC257 333 3 215 26 1 5 41 NT5DC3
SE_02_053300275 chr12:103798680-103869508 Sample_02_0533 Blood vessel Circle of Willis_54y 275 29 1929 359 5 61 636 NT5DC3,TTC41P
SE_02_126501477 chr12:103798691-103828422 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1477 10 835 133 1 26 145 NT5DC3
SE_01_007400290 chr12:103798746-103869936 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 290 8 1949 366 5 61 629 GNN,NT5DC3
SE_01_009100260 chr12:103798770-103869620 Sample_01_0091 Uterus uterus 260 9 1924 359 5 61 627 GNN,NT5DC3
SE_02_066100737 chr12:103798788-103807398 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 737 5 236 26 1 6 90 NT5DC3
SE_01_004500665 chr12:103798854-103806681 Sample_01_0045 Mammary gland mammary-epithelial-cell 665 2 210 25 1 5 37 NT5DC3
SE_02_071500672 chr12:103798910-103805624 Sample_02_0715 Pancreas SUIT2_TP63dN 672 6 194 24 1 3 0 NT5DC3
SE_01_008300239 chr12:103798973-103869875 Sample_01_0083 Sigmoid colon sigmoid-colon 239 8 1938 366 5 61 622 GNN,NT5DC3
SE_02_099000744 chr12:103799000-103806287 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 744 2 198 24 1 3 15 NT5DC3
SE_02_035900432 chr12:103799152-103807362 Sample_02_0359 Colon Colo741 432 1 220 23 0 6 86 NT5DC3
SE_01_011000312 chr12:103799214-103869543 Sample_01_0110 Aorta thoracic aorta_37y 312 30 1906 355 4 61 622 NT5DC3,TTC41P
SE_01_010900182 chr12:103799329-103869041 Sample_01_0109 Colon transverse colon_54y 182 31 1888 351 4 61 622 NT5DC3,TTC41P
SE_02_111000542 chr12:103799408-103825047 Sample_02_1110 Other HGrC1 542 9 711 101 0 20 132 NT5DC3
SE_02_093700721 chr12:103799494-103818068 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 721 3 527 73 0 19 132 NT5DC3
SE_02_149300366 chr12:103799554-103829489 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 366 5 830 131 0 27 132 NT5DC3
SE_02_111300904 chr12:103799604-103806095 Sample_02_1113 Bone U2OS 904 3 170 20 0 3 0 NT5DC3
SE_02_048001285 chr12:103800191-103807355 Sample_02_0480 Gingival epithelial HGEP 1285 5 191 21 0 5 86 NT5DC3
SE_02_065201119 chr12:103800249-103807278 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1119 7 187 21 0 5 86 NT5DC3
SE_02_095600435 chr12:103818616-103859740 Sample_02_0956 Brain IDH1_2658 435 14 1094 230 3 37 336 NT5DC3,TTC41P
SE_01_008900278 chr12:103819294-103869803 Sample_01_0089 Transverse colon transverse-colon 278 6 1345 282 4 41 490 GNN,NT5DC3
SE_02_018500965 chr12:103819348-103860669 Sample_02_0185 Skin UACC257 965 5 1095 230 3 36 336 GNN,NT5DC3
SE_02_044200322 chr12:103821811-103870461 Sample_02_0442 Bone MG63.3 322 34 1305 278 4 41 516 NT5DC3,TTC41P
SE_01_007800270 chr12:103827305-103869521 Sample_01_0078 Heart left ventricle heart-left-ventricle 270 3 1118 234 4 37 490 GNN,NT5DC3
SE_02_129800156 chr12:103827498-103871429 Sample_02_1298 Hilar lymph node Hilar lymph node 156 13 1169 244 4 38 523 NT5DC3,TTC41P
SE_02_129600144 chr12:103827506-103871805 Sample_02_1296 Perigastric lymph node Perigastric lymph node 144 16 1177 244 4 38 523 NT5DC3,TTC41P
SE_02_129700252 chr12:103828090-103871373 Sample_02_1297 Lung lung 252 18 1159 240 4 38 523 NT5DC3,TTC41P
SE_02_053400510 chr12:103828255-103869306 Sample_02_0534 Blood vessel Circle of Willis_60y 510 14 1093 224 4 35 490 NT5DC3,TTC41P
SE_02_129900298 chr12:103831095-103871407 Sample_02_1299 Liver liver 298 11 1077 230 4 35 523 NT5DC3,TTC41P
SE_02_077600768 chr12:103832223-103857314 Sample_02_0776 Pancreas EndoC-BH1 768 6 633 134 3 29 318 NT5DC3,TTC41P
SE_01_007700362 chr12:103834531-103869823 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 362 7 938 201 3 33 490 GNN,NT5DC3
SE_02_127800193 chr12:103835281-103870737 Sample_02_1278 Chordoma UCH1_DMSO_48h 193 12 938 201 3 31 523 NT5DC3,TTC41P
SE_02_024200046 chr12:103837964-103882060 Sample_02_0242 Colon V481 46 3 1171 269 7 35 523 GNN,NT5DC3,HSP90B1,MIR3652
SE_01_008000557 chr12:103838571-103871682 Sample_01_0080 Prostate prostate 557 4 854 189 3 32 523 GNN,NT5DC3
SE_03_001300839 chr12:103838878-103871998 Sample_03_0013 Lung A549 839 3 857 190 3 32 523 GNN,NT5DC3
SE_02_048101334 chr12:103842992-103862331 Sample_02_0481 Mammary gland MDA-MB231 1334 5 493 123 2 23 238 TTC41P,NT5DC3
SE_02_077502400 chr12:103844767-103860884 Sample_02_0775 Pancreas EndoC-BH1_SE 2400 11 422 108 2 12 50 TTC41P,NT5DC3
SE_02_066900656 chr12:103847779-103870330 Sample_02_0669 Prostate prostate cancer_DSG 656 11 603 142 3 14 214 TTC41P,NT5DC3
SE_02_066800416 chr12:103848312-103859917 Sample_02_0668 Prostate prostate cancer FA 416 5 306 80 2 9 44 TTC41P,NT5DC3
SE_02_113701326 chr12:103849156-103860980 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1326 6 312 80 2 9 56 TTC41P,NT5DC3
SE_02_057201044 chr12:103849799-103865916 Sample_02_0572 Brain LN229_1_mM_glucose 1044 6 430 96 2 12 144 TTC41P,NT5DC3
SE_02_084600796 chr12:103850306-103861483 Sample_02_0846 Mammary gland MDA-MB-231_untreat 796 6 306 78 2 9 101 TTC41P,NT5DC3
SE_02_057100991 chr12:103850393-103865133 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 991 9 385 93 2 12 144 TTC41P,NT5DC3
SE_02_126301641 chr12:103850994-103861388 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1641 3 289 74 1 9 99 TTC41P,NT5DC3
SE_02_126701194 chr12:103851102-103861181 Sample_02_1267 Bone Im-GCT-4072_G34W 1194 7 281 74 1 9 86 TTC41P,NT5DC3
SE_02_127300994 chr12:103856921-103861162 Sample_02_1273 Cervix HeLa 994 1 140 36 0 4 85 TTC41P,NT5DC3
Genomic distribution of SEs associated with NT5DC3
Genome Browser

The strength of the tissue affected by the gene

Expression of NT5DC3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)