Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000106236
Gene: NPTX2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:98617285-98629869 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077500340 chr7:98534817-98574093 Sample_02_0775 Pancreas EndoC-BH1_SE 340 22 1096 37 5 78 0 NPTX2
SE_02_141300390 chr7:98540572-98574802 Sample_02_1413 Muscle RH4_sgBRG1 390 10 956 37 6 78 0 NPTX2
SE_02_036400326 chr7:98550987-98572861 Sample_02_0364 Skeletal muscle CTR 326 1 617 29 5 54 0 NPTX2
SE_02_108100304 chr7:98551142-98572881 Sample_02_1081 Muscle CTR shCtrl 304 11 615 29 5 54 0 NPTX2
SE_02_108000073 chr7:98551215-98572426 Sample_02_1080 Muscle JR1 shCtrl 73 7 597 28 5 54 0 NPTX2
SE_02_087600209 chr7:98551245-98572479 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 209 10 598 29 5 54 0 NPTX2
SE_02_087700423 chr7:98551352-98572136 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 423 11 586 28 5 54 0 NPTX2
SE_02_036900519 chr7:98551910-98573016 Sample_02_0369 Skeletal muscle RD 519 3 604 29 5 54 0 NPTX2
SE_02_037900520 chr7:98551910-98573016 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 520 3 604 29 5 54 0 NPTX2
SE_02_037300395 chr7:98552106-98571081 Sample_02_0373 Skeletal muscle RMS206 395 4 538 23 4 48 0 NPTX2
SE_02_030600438 chr7:98553121-98571526 Sample_02_0306 Autonomic ganglia SH-SY5Y 438 2 519 22 4 54 0 NPTX2
SE_02_034000377 chr7:98553293-98570949 Sample_02_0340 Brain BE2C_2 377 4 504 21 3 48 0 NPTX2
SE_02_074100589 chr7:98553372-98572826 Sample_02_0741 Muscle RH30 589 9 549 26 4 54 0 NPTX2,BAIAP2L1
SE_02_102300110 chr7:98554414-98574128 Sample_02_1023 Mammary gland SUM159_BRD7_KO 110 9 557 24 4 54 0 NPTX2
SE_02_111500464 chr7:98554888-98574469 Sample_02_1115 Liver HepG2 464 10 549 24 4 54 0 NPTX2,BAIAP2L1
SE_02_111300477 chr7:98555376-98575170 Sample_02_1113 Bone U2OS 477 11 549 25 5 54 0 NPTX2,BAIAP2L1
SE_02_085400752 chr7:98555749-98571933 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 752 4 453 21 4 54 0 NPTX2
SE_02_041900442 chr7:98559858-98574039 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 442 10 409 20 4 48 0 NPTX2
SE_02_102100380 chr7:98560210-98574052 Sample_02_1021 Mammary gland SUM159R 380 7 401 20 4 48 0 NPTX2
SE_02_117400922 chr7:98560318-98573954 Sample_02_1174 Brain GBM02 922 7 389 18 4 48 0 NPTX2
SE_02_117700661 chr7:98616204-98630204 Sample_02_1177 Brain GBM05 661 5 393 13 0 115 932 NPTX2
SE_02_096300334 chr7:98616714-98630411 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 334 2 387 13 0 113 932 NPTX2
SE_02_017600909 chr7:98618295-98656186 Sample_02_0176 Peripheral blood LOUCY 909 4 1063 65 0 98 689 NPTX2
SE_01_004400458 chr7:98618619-98644321 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 458 3 700 34 0 96 689 NPTX2,TRRAP
SE_02_079500347 chr7:98619433-98630476 Sample_02_0795 Brain 1953 347 6 324 11 0 70 689 NPTX2
SE_02_034500333 chr7:98626229-98647846 Sample_02_0345 Blood AML8 333 8 611 38 0 57 455 NPTX2
SE_02_072900486 chr7:98638944-98653102 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 486 7 384 33 0 13 0 NPTX2
SE_02_073300540 chr7:98639067-98647678 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 540 5 232 14 0 13 0 NPTX2
SE_02_073200489 chr7:98639104-98660330 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 489 4 623 51 0 16 0 NPTX2
SE_02_048200300 chr7:98640671-98643124 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 300 1 65 2 0 0 0 NPTX2
SE_02_048400435 chr7:98640832-98643077 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 435 3 56 2 0 0 0 NPTX2
SE_02_048800294 chr7:98640926-98642893 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 294 2 48 1 0 0 0 NPTX2
SE_02_048900418 chr7:98641092-98643156 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 418 1 53 2 0 0 0 NPTX2
SE_02_048300376 chr7:98641153-98643077 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 376 2 50 2 0 0 0 NPTX2
SE_02_072000287 chr7:98653196-98655968 Sample_02_0720 Pancreas AsPC1_TP63dN_DOX 287 1 101 4 0 0 0 NPTX2
SE_02_124200050 chr7:98680460-98706459 Sample_02_1242 Skin UISO_virus_negative 50 11 863 64 1 37 0 NPTX2

Genomic distribution of SEs associated with NPTX2

The strength of the tissue affected by the gene


Expression of NPTX2