SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000204099
Gene: NEU4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:241809065-241817413 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_033000557 chr2:241789819-241805220 Sample_02_0330 Endoderm MHG 557 4 0 53 1 12 611 GAL3ST2,NEU4
SE_02_019700169 chr2:241789925-241805219 Sample_02_0197 Stomach SNU1750 169 2 0 53 1 12 611 GAL3ST2,NEU4
SE_02_097100676 chr2:241797958-241816690 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 676 6 0 60 0 12 1847 NEU4,GAL3ST2,PDCD1
SE_02_143200312 chr2:241798093-241863864 Sample_02_1432 Bone A673 STAG2 WT 312 14 0 202 0 12 3099 NEU4,PDCD1,GAL3ST2,LINC01237,RTP5
SE_02_109900830 chr2:241798246-241845621 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 830 13 0 138 0 12 2090 NEU4,GAL3ST2,LINC01237,RTP5,PDCD1,D2HGDH
SE_02_118900390 chr2:241798339-241814911 Sample_02_1189 Brain GBM22 390 4 0 54 0 12 1513 NEU4,GAL3ST2,PDCD1
SE_02_147900425 chr2:241801762-241845287 Sample_02_1479 Bone EW-7 425 11 0 122 0 12 1900 NEU4,GAL3ST2,LINC01237,RTP5,PDCD1
SE_02_121200113 chr2:241802374-241818783 Sample_02_1212 Brain GBM30 113 5 0 59 0 9 1788 NEU4,GAL3ST2,PDCD1
SE_02_128001393 chr2:241803001-241864627 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1393 17 0 184 0 9 2797 NEU4,PDCD1,GAL3ST2,LINC01237,RTP5
SE_02_119700775 chr2:241803075-241816081 Sample_02_1197 Brain GBM33 775 7 0 39 0 9 1382 NEU4,GAL3ST2,PDCD1
SE_02_148200815 chr2:241803144-241818722 Sample_02_1482 Bone POE 815 6 0 57 0 9 1788 NEU4,GAL3ST2,PDCD1
SE_02_143300904 chr2:241803316-241855332 Sample_02_1433 Bone A673 STAG2 null 904 11 0 156 0 9 2590 NEU4,PDCD1,GAL3ST2,LINC01237,RTP5
SE_02_107900417 chr2:241803531-241814752 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 417 4 0 33 0 6 1074 NEU4,GAL3ST2,PDCD1
SE_02_107800369 chr2:241803533-241815138 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 369 3 0 34 0 6 1172 NEU4,GAL3ST2,PDCD1
SE_02_096000526 chr2:241804072-241815495 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 526 4 0 33 0 2 1125 NEU4,GAL3ST2,PDCD1
SE_02_096200775 chr2:241804680-241817635 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 775 4 0 43 0 2 1479 NEU4,GAL3ST2,PDCD1
SE_02_037700062 chr2:241808247-241813916 Sample_02_0377 Skeletal muscle RMS238 62 2 0 27 0 0 713 NEU4,PDCD1,GAL3ST2
Genomic distribution of SEs associated with NEU4
Genome Browser

The strength of the tissue affected by the gene

Expression of NEU4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)