SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000173171
Gene: MTX1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:155208699-155213824 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_142700261 chr1:155205648-155213180 Sample_02_1427 Shoulder fibroblast_343 261 1 191 9 3 80 914 THBS3,MTX1,KRTCAP2,TRIM46,GBA,MUC1,GBAP1,SCAMP3,MIR92B,FAM189B
SE_02_025200257 chr1:155205695-155215825 Sample_02_0252 Neuroblastoma IMR5-75-shMYCN-MYCN_high 257 1 262 11 3 80 1415 MTX1,THBS3,GBAP1,GBA,SCAMP3,MIR92B,KRTCAP2,FAM189B,TRIM46,MUC1
SE_02_152900652 chr1:155205974-155215834 Sample_02_1529 Peripheral blood neutrophils_0BC75 652 1 257 11 3 79 1418 THBS3,MTX1,GBAP1,KRTCAP2,TRIM46,GBA,MUC1,SCAMP3,MIR92B,FAM189B
SE_02_142800474 chr1:155206138-155212870 Sample_02_1428 Shoulder fibroblast_316 474 1 177 7 2 77 824 THBS3,MTX1,KRTCAP2,TRIM46,GBA,MUC1,GBAP1,SCAMP3,MIR92B,FAM189B
SE_02_142600163 chr1:155206263-155212994 Sample_02_1426 Shoulder fibroblast_341 163 1 177 7 2 71 833 THBS3,MTX1,KRTCAP2,TRIM46,GBA,MUC1,GBAP1,SCAMP3,MIR92B,FAM189B
SE_00_002500255 chr1:155206469-155214708 Sample_00_0025 Muscle of leg muscle-of-leg 255 1 194 8 2 66 1113 MTX1,THBS3,GBAP1,GBA,SCAMP3,MIR92B,KRTCAP2,FAM189B,TRIM46,MUC1
SE_02_153000585 chr1:155206483-155216685 Sample_02_1530 Peripheral blood neutrophils_0BA0X 585 1 252 9 2 66 1436 THBS3,MTX1,GBAP1,KRTCAP2,TRIM46,GBA,MUC1,SCAMP3,MIR92B,FAM189B
SE_02_068300299 chr1:155206516-155210222 Sample_02_0683 Lung DMS114 299 1 78 3 0 60 483 THBS3,MTX1,KRTCAP2,TRIM46,GBA,MUC1,GBAP1,MIR92B,FAM189B
SE_02_061701255 chr1:155206537-155210510 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 1255 1 84 3 0 63 525 THBS3,MTX1,KRTCAP2,TRIM46,GBA,MUC1,GBAP1,MIR92B,FAM189B
SE_01_005200552 chr1:155206550-155221432 Sample_01_0052 Blood neutrophil 552 1 377 13 3 66 1859 MTX1,THBS3,GBAP1,GBA,SCAMP3,MIR92B,KRTCAP2,FAM189B,TRIM46,MUC1
SE_02_033900359 chr1:155206661-155210154 Sample_02_0339 Neuroblastoma NGP 359 1 74 3 0 59 452 MTX1,THBS3,GBA,MIR92B,KRTCAP2,TRIM46,MUC1,FAM189B,GBAP1
SE_00_002600284 chr1:155206670-155210020 Sample_00_0026 Muscle of trunk muscle-of-trunk 284 1 72 3 0 59 452 MTX1,THBS3,GBA,MIR92B,KRTCAP2,TRIM46,MUC1,FAM189B,GBAP1
SE_00_001000494 chr1:155206688-155210007 Sample_00_0010 Embryo endodermal-cell 494 1 70 3 0 59 448 MTX1,THBS3,GBA,MIR92B,KRTCAP2,TRIM46,MUC1,FAM189B,GBAP1
SE_02_004500643 chr1:155206893-155209897 Sample_02_0045 Embryo endodermal CyT49_ES_D7 643 1 63 2 0 59 420 MTX1,THBS3,GBA,MIR92B,KRTCAP2,TRIM46,MUC1,FAM189B,GBAP1
SE_02_126501410 chr1:155206959-155212183 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1410 1 131 5 1 66 545 THBS3,MTX1,KRTCAP2,TRIM46,GBA,MUC1,GBAP1,MIR92B,FAM189B
SE_02_104900556 chr1_GL383519v1_alt:10429-84607 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 556 53 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_081901145 chr1_GL383519v1_alt:10615-83299 Sample_02_0819 Ovary Mucinous ovarian cancer 1145 15 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_106800097 chr1_GL383519v1_alt:10750-84039 Sample_02_1068 Brain NGP_ctrl 97 14 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_122700608 chr1_GL383519v1_alt:10930-83477 Sample_02_1227 Bone marrow U266 608 19 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_109800920 chr1_GL383519v1_alt:11258-83034 Sample_02_1098 Blood THP1_DMSO_noPMA 920 13 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_104700977 chr1_GL383519v1_alt:11291-85754 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 977 20 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_082600730 chr1_GL383519v1_alt:1371-78320 Sample_02_0826 Stomach gastric tumor 730 35 0 0 0 0 0 MTX1,GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_104602965 chr1_GL383519v1_alt:17008-61867 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2965 12 0 0 0 0 0 MTX1,GBA,GBAP1,SCAMP3,FAM189B
SE_02_104801329 chr1_GL383519v1_alt:17798-67331 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1329 13 0 0 0 0 0 MTX1,GBA,GBAP1,SCAMP3,FAM189B
SE_02_092800531 chr1_GL383519v1_alt:1839-78941 Sample_02_0928 Peripheral blood neutrophils_Ecoli 531 19 0 0 0 0 0 MTX1,GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_110600262 chr1_GL383519v1_alt:2320-83685 Sample_02_1106 Brain NGP 262 25 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_158400943 chr1_GL383519v1_alt:2798-83126 Sample_02_1584 Brain U87 GBM_Mock 943 12 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_093500642 chr1_GL383519v1_alt:2834-79454 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 642 20 0 0 0 0 0 MTX1,GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_125300503 chr1_GL383519v1_alt:3026-83600 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 503 20 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_093000500 chr1_GL383519v1_alt:3047-79102 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 500 36 0 0 0 0 0 MTX1,GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_068300295 chr1_GL383519v1_alt:3047-83639 Sample_02_0683 Lung DMS114 295 32 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_064000349 chr1_GL383519v1_alt:3051-83430 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 349 22 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_061500588 chr1_GL383519v1_alt:3065-83253 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 588 13 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_061700275 chr1_GL383519v1_alt:3080-83410 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 275 14 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_064300238 chr1_GL383519v1_alt:3083-83138 Sample_02_0643 Mammary gland MDA-MB-436 238 22 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_076500180 chr1_GL383519v1_alt:3121-84458 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 180 30 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_068701233 chr1_GL383519v1_alt:3130-83878 Sample_02_0687 Lung NCI-H146_no infection 1233 23 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_127801168 chr1_GL383519v1_alt:3170-82787 Sample_02_1278 Chordoma UCH1_DMSO_48h 1168 13 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_077500353 chr1_GL383519v1_alt:3197-110268 Sample_02_0775 Pancreas EndoC-BH1_SE 353 41 0 0 0 0 0 MTX1,PKLR,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_050100415 chr1_GL383519v1_alt:3493-83086 Sample_02_0501 Blood HL-60_CTRL 415 19 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_111200696 chr1_GL383519v1_alt:3699-79182 Sample_02_1112 T lymphocyte THP-6 T-ALL 696 13 0 0 0 0 0 MTX1,GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_04_000200564 chr1_GL383519v1_alt:3734-83580 Sample_04_0002 Blood cold shocked K562 564 11 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_04_000100882 chr1_GL383519v1_alt:3863-88436 Sample_04_0001 Blood heat shocked K562 882 11 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_046601071 chr1_GL383519v1_alt:3885-83008 Sample_02_0466 Adipose visceral adipocytes 1071 28 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_082700746 chr1_GL383519v1_alt:427-47022 Sample_02_0827 Stomach normal gastric 746 8 0 0 0 0 0 GBA,GBAP1,MTX1
SE_02_103600349 chr1_GL383519v1_alt:4828-109452 Sample_02_1036 Mammary gland HCC70_XY018 349 44 0 0 0 0 0 MTX1,PKLR,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_104300892 chr1_GL383519v1_alt:4947-83218 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 892 31 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_153000795 chr1_GL383519v1_alt:54-79212 Sample_02_1530 Peripheral blood neutrophils_0BA0X 795 24 0 0 0 0 0 MTX1,GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_152901060 chr1_GL383519v1_alt:823-79100 Sample_02_1529 Peripheral blood neutrophils_0BC75 1060 28 0 0 0 0 0 MTX1,GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_126501468 chr1_GL383519v1_alt:8293-82945 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1468 11 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_142700791 chr1_GL383519v1_alt:8394-82813 Sample_02_1427 Shoulder fibroblast_343 791 20 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_116600890 chr1_GL383519v1_alt:8405-83507 Sample_02_1166 Biliary H69_TGF beta_16h_1 890 27 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_142600676 chr1_GL383519v1_alt:8465-82935 Sample_02_1426 Shoulder fibroblast_341 676 20 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_126900404 chr1_GL383519v1_alt:8489-82775 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 404 13 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_103000604 chr1_GL383519v1_alt:8521-83741 Sample_02_1030 Colon DKO 604 26 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_141500407 chr1_GL383519v1_alt:8850-79081 Sample_02_1415 Brain DIPGIV 407 15 0 0 0 0 0 MTX1,GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_110700618 chr1_GL383519v1_alt:8892-82892 Sample_02_1107 Brain SK-N-AS 618 22 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_133100624 chr1_GL383519v1_alt:8941-78773 Sample_02_1331 Blood Molm13_CTRL 624 13 0 0 0 0 0 MTX1,GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_00_005100695 chr1_GL383519v1_alt:8948-82778 Sample_00_0051 Adrenal gland adrenal gland 30y 695 23 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
SE_02_088601223 chr1_GL383519v1_alt:9377-82996 Sample_02_0886 Skin foreskin_ p63KLF4 1223 16 0 0 0 0 0 MTX1,HCN3,CLK2,GBA,GBAP1,SCAMP3,FAM189B
Genomic distribution of SEs associated with MTX1
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The strength of the tissue affected by the gene

Expression of MTX1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)