SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000066697
Gene: MSANTD3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr9:100427143-100451734 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_048101838 chr9:100411046-100439458 Sample_02_0481 Mammary gland MDA-MB231 1838 8 756 89 1 53 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_061001043 chr9:100411162-100432034 Sample_02_0610 Liposarcoma MLS 1765-92 1043 4 542 68 1 30 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_127800331 chr9:100411250-100452011 Sample_02_1278 Chordoma UCH1_DMSO_48h 331 7 1091 127 1 104 696 MSANTD3,MSANTD3-TMEFF1,TMEFF1
SE_02_158400403 chr9:100411330-100431516 Sample_02_1584 Brain U87 GBM_Mock 403 4 528 64 1 29 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_157900526 chr9:100411430-100444534 Sample_02_1579 Renal 786-M1A 526 11 896 106 1 72 468 MSANTD3,MSANTD3-TMEFF1,TMEFF1
SE_02_113900628 chr9:100421365-100437394 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 628 6 430 50 1 31 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_072700195 chr9:100421412-100432286 Sample_02_0727 Fetal lung IMR90_Etoposide 195 3 281 34 1 21 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_099100514 chr9:100421961-100432085 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 514 2 262 33 1 20 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_141600661 chr9:100425333-100444566 Sample_02_1416 Brain SF9402 661 5 520 62 1 61 476 MSANTD3,MSANTD3-TMEFF1,TMEFF1
SE_02_060601022 chr9:100425491-100429443 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 1022 1 85 12 1 10 259 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_093600614 chr9:100425583-100429440 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 614 1 84 11 1 10 259 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_060500844 chr9:100425583-100431737 Sample_02_0605 Skin Skin Fibroblast_DMSO 844 2 143 21 1 17 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_064500759 chr9:100425641-100429472 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 759 1 83 11 1 10 263 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_113701029 chr9:100425651-100431044 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1029 1 122 16 1 16 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_141800281 chr9:100425695-100431427 Sample_02_1418 Brain SF9427 281 1 132 18 1 16 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_063600684 chr9:100425740-100431818 Sample_02_0636 Skin BJ5ta 684 1 140 21 1 17 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_093800349 chr9:100425747-100431055 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 349 1 120 16 1 16 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_113600619 chr9:100425751-100431422 Sample_02_1136 Bone U2OS-anaphase/telophase 619 1 130 18 1 16 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_132100759 chr9:100425764-100430981 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 759 1 117 15 1 16 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_132000924 chr9:100425883-100429431 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 924 1 78 11 1 10 259 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_135300540 chr9:100425883-100431517 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 540 2 132 18 1 16 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_061501047 chr9:100425984-100431178 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 1047 1 123 18 1 16 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_135101020 chr9:100425987-100430857 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 1020 1 111 13 1 15 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_126100518 chr9:100425989-100429563 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 518 1 80 11 1 11 276 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_135400766 chr9:100426006-100430969 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 766 1 114 15 1 16 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_126000415 chr9:100426028-100429449 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 415 1 77 11 1 10 259 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_094700586 chr9:100426038-100430645 Sample_02_0947 Tongue Cal27 586 1 107 13 1 12 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_083200716 chr9:100426235-100429454 Sample_02_0832 Umblical vein HUVECs_TNF30min 716 1 73 11 1 10 259 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_132200939 chr9:100426397-100429429 Sample_02_1322 Connective Tissue HT1080_WT 939 1 65 11 1 10 259 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_147200558 chr9:100426454-100439866 Sample_02_1472 Fetal lung IMR-90 558 2 348 45 1 40 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_114900566 chr9:100426464-100430590 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 566 1 93 13 1 12 306 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_125900867 chr9:100426507-100429521 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 867 1 64 11 1 11 266 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_126200585 chr9:100426563-100429460 Sample_02_1262 Bone Im-GCT-3504_G34W 585 1 62 10 1 10 260 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_145200934 chr9:100427452-100429441 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 934 1 48 4 1 5 93 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_02_145500564 chr9:100427452-100434863 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 564 2 191 23 1 15 140 MSANTD3,TMEFF1,MSANTD3-TMEFF1
SE_01_011700628 chr9:100427459-100429482 Sample_01_0117 Lung fibroblast of lung 628 1 48 4 1 5 92 MSANTD3,TMEFF1,MSANTD3-TMEFF1
Genomic distribution of SEs associated with MSANTD3
Genome Browser

The strength of the tissue affected by the gene

Expression of MSANTD3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)