SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000264349
Gene: MIR4258 Gene type: miRNA
Strand: + External links:
Genomic region: chr1:154975693-154975783 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_031200370 chr1:154965238-154986013 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 370 1 540 24 5 167 1666 SHC1,FLAD1,MIR4258,CKS1B,DCST2,PYGO2,ZBTB7B,DCST1,PBXIP1,PMVK,LENEP
SE_02_030400071 chr1:154966727-154985940 Sample_02_0304 Neuroblastoma N206 71 1 488 21 5 141 1375 SHC1,FLAD1,MIR4258,CKS1B,DCST2,PYGO2,ZBTB7B,DCST1,PBXIP1,PMVK,LENEP
SE_02_110400214 chr1:154967308-154984745 Sample_02_1104 Brain NB-69 214 1 449 20 5 141 1375 CKS1B,SHC1,FLAD1,MIR4258,PMVK,PBXIP1,DCST2,PYGO2,LENEP,ZBTB7B,DCST1
SE_02_110500462 chr1:154967373-154983182 Sample_02_1105 Brain NBL-S 462 1 406 15 4 135 1178 SHC1,CKS1B,MIR4258,PMVK,PBXIP1,ZBTB7B,PYGO2,LENEP,FLAD1
SE_02_025200092 chr1:154967576-154985396 Sample_02_0252 Neuroblastoma IMR5-75-shMYCN-MYCN_high 92 1 455 20 5 141 1359 SHC1,FLAD1,MIR4258,CKS1B,DCST2,PYGO2,ZBTB7B,DCST1,PBXIP1,PMVK,LENEP
SE_04_000200316 chr1:154968926-154985683 Sample_04_0002 Blood cold shocked K562 316 1 428 21 5 110 1065 CKS1B,SHC1,FLAD1,MIR4258,PMVK,PBXIP1,DCST2,PYGO2,LENEP,ZBTB7B,DCST1
SE_02_033900217 chr1:154972153-154978872 Sample_02_0339 Neuroblastoma NGP 217 1 161 9 1 49 371 CKS1B,MIR4258,SHC1,PYGO2,PBXIP1,FLAD1,ZBTB7B,PMVK,LENEP
SE_02_057900964 chr1:154972286-154978719 Sample_02_0579 Blood HEL_sgNeg2 964 1 156 7 1 48 357 CKS1B,MIR4258,SHC1,PMVK,PBXIP1,ZBTB7B,PYGO2,LENEP,FLAD1
SE_02_061700873 chr1:154972403-154978591 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 873 1 152 7 1 48 345 CKS1B,MIR4258,SHC1,PMVK,PBXIP1,ZBTB7B,PYGO2,LENEP,FLAD1
SE_02_096500561 chr1:154973501-154977048 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 561 1 101 3 1 38 282 CKS1B,MIR4258,SHC1,PMVK,PBXIP1,ZBTB7B,PYGO2,LENEP,FLAD1
SE_01_006800260 chr1:154973517-154976939 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 260 1 97 3 1 38 282 CKS1B,MIR4258,SHC1,PYGO2,PBXIP1,FLAD1,ZBTB7B,PMVK,LENEP
SE_02_122000426 chr1:154973563-154977091 Sample_02_1220 Bone marrow JJN3 426 1 100 3 1 38 282 CKS1B,MIR4258,SHC1,PMVK,PBXIP1,ZBTB7B,PYGO2,LENEP,FLAD1
Genomic distribution of SEs associated with MIR4258
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR4258

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)