SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000221055
Gene: MIR1302-3 Gene type: miRNA
Strand: - External links:
Genomic region: chr2:113582959-113583096 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_105000387 chr2:113576319-113584932 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 387 1 104 11 0 0 538 WASH2P,FAM138B,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,DDX11L2,RABL2A,RPL23AP7
SE_02_103300325 chr2:113576819-113585994 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 325 1 115 12 0 0 538 WASH2P,FAM138B,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,DDX11L2,RABL2A,RPL23AP7
SE_02_146700345 chr2:113577151-113587378 Sample_02_1467 Blood HUDEP-2_LRFKO 345 1 116 11 0 0 538 WASH2P,FAM138B,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,DDX11L2,RABL2A,RPL23AP7
SE_02_111600235 chr2:113577182-113585821 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 235 1 109 10 0 0 538 WASH2P,FAM138B,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,DDX11L2,RABL2A,RPL23AP7
SE_02_072700753 chr2:113577264-113585426 Sample_02_0727 Fetal lung IMR90_Etoposide 753 1 100 10 0 0 511 WASH2P,FAM138B,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,DDX11L2,RABL2A,RPL23AP7
SE_02_146800441 chr2:113577284-113587557 Sample_02_1468 Blood HUDEP-2_WT 441 1 118 11 0 0 503 WASH2P,FAM138B,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,DDX11L2,RABL2A,RPL23AP7
SE_02_146600388 chr2:113578195-113586005 Sample_02_1466 Blood HUDEP-2_BCL11AKO 388 1 102 11 0 0 350 WASH2P,FAM138B,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,DDX11L2,RABL2A,RPL23AP7
SE_02_113000439 chr2:113579748-113585719 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 439 1 79 9 0 0 223 WASH2P,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,FAM138B,DDX11L2,RABL2A,RPL23AP7
SE_02_098800324 chr2:113579802-113585687 Sample_02_0988 Blood K562_EPZ 324 1 79 9 0 0 223 WASH2P,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,FAM138B,DDX11L2,RABL2A,RPL23AP7
SE_02_136300327 chr2:113579870-113585553 Sample_02_1363 Blood Hudep2 327 1 78 9 0 0 223 WASH2P,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,FAM138B,DDX11L2,RABL2A,RPL23AP7
SE_02_057600895 chr2:113579930-113585902 Sample_02_0576 Blood HEL_sgLKB1e2 895 1 81 9 0 0 223 WASH2P,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,FAM138B,DDX11L2,RABL2A,RPL23AP7
SE_02_058000808 chr2:113579953-113585892 Sample_02_0580 Blood HEL_sgSIK3e4 808 1 81 9 0 0 223 WASH2P,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,FAM138B,DDX11L2,RABL2A,RPL23AP7
SE_02_109500556 chr2:113580036-113585583 Sample_02_1095 Blood CD34 Erythroid cells_Don002 556 1 74 9 0 0 223 WASH2P,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,FAM138B,DDX11L2,RABL2A,RPL23AP7
SE_02_098700537 chr2:113580910-113585328 Sample_02_0987 Blood K562_Control_1 537 1 63 9 0 0 223 WASH2P,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,FAM138B,DDX11L2,RABL2A,RPL23AP7
SE_02_109900773 chr2:113580935-113585138 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 773 1 58 8 0 0 223 WASH2P,MIR1302-3,PGM5P3-AS1,PGM5P4-AS1,FAM138B,DDX11L2,RABL2A,RPL23AP7
Genomic distribution of SEs associated with MIR1302-3
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR1302-3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)