SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000221430
Gene: MIR1294 Gene type: miRNA
Strand: + External links:
Genomic region: chr5:154347106-154347247 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_084000507 chr5:154249738-154322750 Sample_02_0840 Embryo hNPCs_R1159Q/+ 507 11 1957 299 11 97 130 GALNT10,MIR1294
SE_02_083900698 chr5:154257335-154289071 Sample_02_0839 Embryo hNPCs_K755R/+ 698 8 842 162 5 42 0 GALNT10,MIR1294
SE_02_093800359 chr5:154259752-154289169 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 359 7 784 150 6 39 0 GALNT10,MIR1294
SE_02_093600438 chr5:154260019-154288854 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 438 13 772 150 5 38 0 GALNT10,MIR1294
SE_02_056200169 chr5:154267149-154312718 Sample_02_0562 Lung A549_Dex-treated 169 13 1199 174 8 70 130 GALNT10,MIR1294
SE_02_056100211 chr5:154267420-154309646 Sample_02_0561 Lung A549_1 211 10 1106 167 8 65 130 GALNT10,MIR1294
SE_02_127800760 chr5:154267509-154313013 Sample_02_1278 Chordoma UCH1_DMSO_48h 760 10 1195 174 8 70 130 GALNT10,MIR1294
SE_02_125300198 chr5:154270359-154315681 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 198 9 1190 171 8 63 130 GALNT10,MIR1294
SE_02_108800536 chr5:154272099-154297809 Sample_02_1088 Mammary gland T47D_shCtrl_45min 536 7 667 105 5 26 79 GALNT10,MIR1294
SE_02_156001424 chr5:154272163-154302797 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1424 5 798 114 6 57 130 GALNT10,MIR1294
SE_02_077800219 chr5:154272321-154298421 Sample_02_0778 Mammary gland MCF7_FASR 219 5 671 103 5 40 130 GALNT10,MIR1294
SE_02_093500556 chr5:154272703-154291105 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 556 9 459 80 5 18 0 GALNT10,MIR1294
SE_02_108600766 chr5:154272846-154298251 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 766 8 662 98 5 40 129 GALNT10,MIR1294
SE_02_123400465 chr5:154272930-154298300 Sample_02_1234 Mammary gland T47D_Full 465 7 660 98 5 40 130 GALNT10,MIR1294
SE_02_044801011 chr5:154276152-154332268 Sample_02_0448 Bone MNNG 1011 15 1469 172 9 58 210 GALNT10,MIR1294
SE_02_152300342 chr5:154284207-154297851 Sample_02_1523 Lung A549 DMSO 342 2 360 43 2 11 81 GALNT10,MIR1294
SE_02_077700252 chr5:154284409-154298430 Sample_02_0777 Mammary gland MCF7_TAMR 252 4 366 42 2 25 130 GALNT10,MIR1294
SE_02_151400464 chr5:154284435-154313382 Sample_02_1514 Lung Differentiated AT1-like cells 464 7 757 88 5 47 130 GALNT10,MIR1294
SE_02_075400600 chr5:154284506-154297506 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 600 2 336 42 2 9 75 GALNT10,MIR1294
SE_02_156901034 chr5:154284675-154289699 Sample_02_1569 Endothelial Endothelial cells 1034 1 130 21 2 3 0 GALNT10,MIR1294
SE_02_075201137 chr5:154284894-154291341 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 1137 2 150 23 2 3 0 GALNT10,MIR1294
SE_02_151300577 chr5:154284988-154308911 Sample_02_1513 Lung Transitional AT2->1 cells 577 3 613 79 4 42 130 GALNT10,MIR1294
SE_02_052500664 chr5:154285084-154302486 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 664 4 461 51 3 39 130 GALNT10,MIR1294
SE_02_044400437 chr5:154319126-154379698 Sample_02_0444 Bone osteosarcoma tumor P10 437 32 1505 109 6 79 244 MIR1294,GALNT10
SE_02_137500989 chr5:154343095-154371629 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 989 12 699 35 3 37 76 MIR1294,GALNT10
SE_02_088601089 chr5:154344926-154370592 Sample_02_0886 Skin foreskin_ p63KLF4 1089 6 624 34 3 25 76 MIR1294,GALNT10
SE_02_093800461 chr5:154348961-154376682 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 461 9 663 27 3 46 164 GALNT10,MIR1294
SE_02_093600626 chr5:154349138-154376164 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 626 7 649 26 3 36 85 GALNT10,MIR1294
SE_02_137700820 chr5:154349185-154375950 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 820 15 643 26 3 36 76 GALNT10,MIR1294
SE_02_127901070 chr5:154349203-154372399 Sample_02_1279 Bone Mesenchymal stem cells 1070 4 547 22 3 25 76 GALNT10,MIR1294
SE_02_132001265 chr5:154349259-154371128 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1265 10 514 22 3 25 76 GALNT10,MIR1294
SE_02_047401068 chr5:154349294-154376514 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1068 9 646 26 3 44 137 GALNT10,MIR1294
SE_02_132200989 chr5:154349403-154371734 Sample_02_1322 Connective Tissue HT1080_WT 989 6 529 22 3 25 76 GALNT10,MIR1294
SE_02_137400695 chr5:154349508-154376607 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 695 23 649 26 3 45 160 GALNT10,MIR1294
SE_02_066000907 chr5:154351312-154371774 Sample_02_0660 Mammary gland MCF10DCIS 907 8 484 19 3 25 76 GALNT10,MIR1294
SE_02_127800658 chr5:154351983-154377399 Sample_02_1278 Chordoma UCH1_DMSO_48h 658 10 604 23 4 46 164 GALNT10,MIR1294
SE_02_139900513 chr5:154352665-154372716 Sample_02_1399 Bone U2OS_siMLL3.1 513 15 484 17 3 25 76 GALNT10,MIR1294,SAP30L-AS1
SE_02_086701290 chr5:154353139-154371766 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1290 9 450 17 3 25 76 GALNT10,MIR1294,SAP30L-AS1
SE_02_131100891 chr5:154353427-154376335 Sample_02_1311 Bone marrow HDMSCs 891 5 552 20 3 37 97 GALNT10,MIR1294
SE_02_046601190 chr5:154353488-154376709 Sample_02_0466 Adipose visceral adipocytes 1190 16 555 20 3 46 164 GALNT10,MIR1294
SE_02_139800712 chr5:154354308-154371233 Sample_02_1398 Bone U2OS_siNC 712 9 399 14 3 25 76 GALNT10,MIR1294,SAP30L-AS1
SE_02_150300550 chr5:154354368-154373429 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 550 4 458 14 3 25 76 GALNT10,MIR1294
SE_02_075100166 chr5:154354437-154419617 Sample_02_0751 Lymphoma Rec-1_WO 166 25 1689 121 15 119 2086 GALNT10,SAP30L-AS1,SAP30L,MIR1294
SE_02_150200306 chr5:154354466-154372758 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 306 3 439 13 3 25 76 GALNT10,MIR1294
SE_02_084001018 chr5:154354691-154371434 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1018 8 389 12 3 25 76 GALNT10,MIR1294,SAP30L
SE_02_150700162 chr5:154354816-154371792 Sample_02_1507 Brain SHEP-21N_DOX_24h 162 5 399 11 3 25 76 GALNT10,MIR1294
SE_02_058600691 chr5:154354841-154372379 Sample_02_0586 Chordal patient-derived chordoma MGH_4 691 6 411 11 3 25 76 GALNT10,MIR1294
SE_02_055700984 chr5:154354853-154371417 Sample_02_0557 iPSCs WT hiPSC#1 984 4 383 11 3 25 76 GALNT10,MIR1294
SE_02_150100434 chr5:154355005-154372644 Sample_02_1501 Brain SHEP-21N_NOSPIKE 434 5 413 11 3 25 76 GALNT10,MIR1294
SE_02_063800576 chr5:154355054-154372428 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 576 10 403 10 2 25 76 GALNT10,MIR1294
SE_02_135500555 chr5:154355132-154372561 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 555 3 406 10 2 25 76 GALNT10,MIR1294
SE_02_060300835 chr5:154355143-154372309 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 835 10 397 10 2 25 76 GALNT10,MIR1294
SE_02_132800598 chr5:154355166-154371741 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 598 7 383 10 2 25 76 GALNT10,MIR1294
SE_02_113801081 chr5:154355193-154371881 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 1081 3 387 10 2 25 76 GALNT10,MIR1294
SE_02_158300903 chr5:154355239-154372058 Sample_02_1583 Fetal lung IMR90_empty_GM 903 13 391 10 2 25 76 GALNT10,MIR1294
SE_02_122800554 chr5:154355257-154371729 Sample_02_1228 Mammary gland MDA-MB-231_2 554 9 379 10 2 25 76 GALNT10,MIR1294
SE_02_113701187 chr5:154355285-154371819 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1187 4 382 10 2 25 76 GALNT10,MIR1294
SE_02_072600293 chr5:154355297-154371725 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 293 11 377 10 2 25 76 GALNT10,MIR1294,SAP30L-AS1
SE_02_137900572 chr5:154355303-154371887 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 572 10 383 10 2 25 76 GALNT10,MIR1294
SE_02_118600695 chr5:154355391-154376260 Sample_02_1186 Brain GBM15 695 8 491 14 2 36 90 GALNT10,MIR1294,SAP30L-AS1
SE_02_066100386 chr5:154355395-154371773 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 386 7 377 10 2 25 76 GALNT10,MIR1294
SE_02_135600519 chr5:154355441-154376117 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 519 5 487 13 2 36 79 GALNT10,MIR1294
SE_02_149700526 chr5:154355511-154371727 Sample_02_1497 Brain SHEP-21N 526 6 371 8 1 25 76 GALNT10,MIR1294
SE_02_151500533 chr5:154355623-154372382 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 533 5 385 8 1 25 76 GALNT10,MIR1294
SE_02_149800539 chr5:154355631-154371768 Sample_02_1498 Brain SHEP-21N_DOX_2h 539 4 370 8 1 25 76 GALNT10,MIR1294
SE_02_156801013 chr5:154355638-154371867 Sample_02_1568 Heart Cardiac progenitor cells 1013 3 375 8 1 25 76 GALNT10,MIR1294
SE_02_087901473 chr5:154355722-154371695 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1473 6 367 8 1 25 76 GALNT10,MIR1294
SE_02_143801302 chr5:154355749-154391368 Sample_02_1438 Liver LSEC 1302 9 838 40 8 78 899 GALNT10,SAP30L-AS1,MIR1294
SE_02_101701840 chr5:154355812-154396582 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1840 8 1000 60 11 78 1175 GALNT10,SAP30L-AS1,SAP30L,MIR1294,HAND1
SE_02_083900496 chr5:154355843-154372318 Sample_02_0839 Embryo hNPCs_K755R/+ 496 6 377 8 1 25 76 GALNT10,MIR1294,SAP30L
SE_02_113300713 chr5:154356046-154376206 Sample_02_1133 Liver Hepatic stellate cells 713 7 475 11 1 36 69 GALNT10,MIR1294
SE_02_131000919 chr5:154356109-154376435 Sample_02_1310 Bone marrow ASMSCs 919 4 476 11 1 43 99 GALNT10,MIR1294
SE_02_088001078 chr5:154356130-154372297 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1078 4 374 7 1 25 56 GALNT10,MIR1294
SE_02_087801294 chr5:154356148-154372312 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1294 3 374 7 1 25 56 GALNT10,MIR1294
SE_02_088201045 chr5:154356303-154372326 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 1045 4 370 5 1 25 36 GALNT10,MIR1294
SE_02_088301309 chr5:154356461-154372151 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 1309 4 365 5 1 25 0 GALNT10,MIR1294
SE_02_156901512 chr5:154356551-154370516 Sample_02_1569 Endothelial Endothelial cells 1512 3 324 5 1 25 0 GALNT10,MIR1294
SE_02_151600846 chr5:154356553-154372462 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 846 5 368 5 1 25 0 GALNT10,MIR1294
SE_02_099100657 chr5:154356716-154371048 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 657 3 323 5 1 25 0 GALNT10,MIR1294
SE_00_005301050 chr5:154357633-154380938 Sample_00_0053 Embryo trophoblast cell originated from H1 1050 12 543 14 5 65 179 GALNT10,MIR1294
SE_02_111300655 chr5:154358622-154371768 Sample_02_1113 Bone U2OS 655 7 303 5 1 25 0 GALNT10,MIR1294
SE_02_105801151 chr5:154358659-154375496 Sample_02_1058 Bone A673_SA2 Rescue 1151 5 404 9 1 33 0 GALNT10,MIR1294
SE_02_113400505 chr5:154359317-154371773 Sample_02_1134 Bone U2OS-interphase 505 5 282 5 1 15 0 GALNT10,MIR1294,SAP30L-AS1
SE_02_148301015 chr5:154360597-154371785 Sample_02_1483 Bone RD-ES 1015 3 259 5 1 15 0 GALNT10,MIR1294
SE_02_158200343 chr5:154365285-154405276 Sample_02_1582 Renal OS-RC-2 343 15 1034 73 11 69 1192 GALNT10,SAP30L-AS1,SAP30L,MIR1294
Genomic distribution of SEs associated with MIR1294
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR1294

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)