SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000130592
Gene: LSP1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:1850904-1892267 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_002500136 chr11:1826485-1883490 Sample_00_0025 Muscle of leg muscle-of-leg 136 7 2203 148 8 273 3107 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_152900055 chr11:1835064-1860543 Sample_02_1529 Peripheral blood neutrophils_0BC75 55 1 1066 69 2 104 1691 TNNI2,LSP1,SYT8,MIR4298,LINC01150,MIR7847,CTSD,TNNT3
SE_02_153000055 chr11:1835132-1861795 Sample_02_1530 Peripheral blood neutrophils_0BA0X 55 1 1098 69 2 105 1674 TNNI2,LSP1,SYT8,MIR4298,LINC01150,MIR7847,CTSD,TNNT3
SE_02_013200589 chr11:1837653-1857722 Sample_02_0132 Lung 1015_CL 589 4 834 49 1 79 931 TNNI2,LSP1,MIR4298,SYT8
SE_02_153100085 chr11:1837835-1858621 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 85 1 855 52 1 79 917 TNNI2,LSP1,MIR4298,SYT8,LINC01150,MIR7847,CTSD,TNNT3
SE_02_010000177 chr11:1837860-1859243 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 177 1 866 53 1 79 917 TNNI2,LSP1,MIR4298,SYT8
SE_02_013100547 chr11:1838053-1857504 Sample_02_0131 Lung 1015_PT 547 3 811 48 1 78 917 TNNI2,LSP1,MIR4298,SYT8
SE_00_000600179 chr11:1839151-1865214 Sample_00_0006 Blood CD14-positive-monocyte 179 4 978 67 3 77 958 TNNI2,MIR4298,LSP1,SYT8
SE_02_133000424 chr11:1839673-1857265 Sample_02_1330 Blood AMU-AML1 424 1 743 43 1 38 708 TNNI2,LSP1,MIR4298,SYT8,LINC01150,MIR7847
SE_02_045600413 chr11:1841604-1857224 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 413 5 648 40 1 18 211 TNNI2,LSP1,MIR4298,SYT8,LINC01150,MIR7847
SE_02_131600582 chr11:1842279-1856766 Sample_02_1316 Brain hMGLs_TREM2-R47H 582 5 605 37 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_010400640 chr11:1842659-1854865 Sample_02_0104 Blood neutrophils 640 3 510 23 1 9 143 LSP1,MIR4298,SYT8,TNNI2
SE_01_002400417 chr11:1843361-1864816 Sample_01_0024 Blood CD14-positive-monocyte 417 3 794 62 2 38 233 MIR4298,LSP1,SYT8,TNNI2
SE_02_010200699 chr11:1843611-1864053 Sample_02_0102 Peripheral blood Macrophages_GM-CSF_72h_IL4 699 2 764 62 2 31 233 MIR4298,LSP1,SYT8,TNNI2
SE_02_010100890 chr11:1843716-1865314 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 890 2 799 64 3 39 316 MIR4298,LSP1,SYT8,TNNI2
SE_02_010300505 chr11:1843773-1865095 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 505 3 790 63 3 38 264 MIR4298,LSP1,SYT8,TNNI2
SE_02_008100573 chr11:1843810-1864261 Sample_02_0081 Blood Monocyte-derived_dendritic_cells 573 3 758 62 2 32 233 MIR4298,LSP1,SYT8,TNNI2
SE_02_045500518 chr11:1843853-1855769 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 518 3 508 31 1 15 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_146001034 chr11:1844027-1857120 Sample_02_1460 Blood Mutz-3 1034 5 552 36 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_115600270 chr11:1844034-1856451 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 270 8 523 34 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_045700432 chr11:1844061-1857304 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 432 2 561 39 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_122401139 chr11:1844071-1856860 Sample_02_1224 Bone marrow normal plasma cell 1139 4 543 36 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_059200426 chr11:1844179-1855361 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 426 4 474 26 1 13 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_103900300 chr11:1844274-1857171 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 300 6 543 36 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_115700244 chr11:1844283-1856845 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 244 8 533 36 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_078300723 chr11:1844324-1857185 Sample_02_0783 Blood MEC2 723 2 545 37 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_014700072 chr11:1844617-1852947 Sample_02_0147 Blood CD4_T_cells 72 3 348 7 1 2 38 LSP1,MIR4298,SYT8,TNNI2
SE_02_104200574 chr11:1844946-1856260 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 574 5 490 32 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_072800566 chr11:1845181-1856780 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 566 4 502 35 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_073500428 chr11:1845233-1857042 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 428 3 512 36 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_01_005200288 chr11:1847909-1855655 Sample_01_0052 Blood neutrophil 288 1 353 27 1 13 143 LSP1,MIR4298,SYT8,TNNI2
SE_02_092700354 chr11:1847918-1855422 Sample_02_0927 Peripheral blood neutrophils_US 354 1 340 25 1 13 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847,CTSD
SE_02_104900349 chr11:1848195-1859455 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 349 1 475 45 1 16 175 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_104700308 chr11:1848210-1859413 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 308 1 474 45 1 16 170 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_075000681 chr11:1848664-1855326 Sample_02_0750 Lymphoma Rec-1_GSI 681 2 318 24 1 13 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_075100747 chr11:1848818-1855596 Sample_02_0751 Lymphoma Rec-1_WO 747 3 327 26 1 13 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_121900419 chr11:1849555-1856331 Sample_02_1219 Bone marrow H929 419 2 327 32 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_149500246 chr11:1849591-1856194 Sample_02_1495 Other monocyte-derived dendritic cells_R848_1h 246 4 313 29 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_073100588 chr11:1849605-1857307 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 588 4 359 37 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_072900426 chr11:1849627-1857027 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 426 3 343 34 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_121800876 chr11:1849968-1857054 Sample_02_1218 Bone marrow Daudi 876 5 324 34 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_01_009200201 chr11:1850556-1891519 Sample_01_0092 Vagina vagina 201 4 1491 129 10 197 1805 LSP1,MIR4298,TNNI2,SYT8,TNNT3
SE_02_037400115 chr11:1852506-1883977 Sample_02_0374 Skeletal muscle RMS209 115 3 1154 112 7 145 1394 LSP1,MIR4298,TNNI2,SYT8,TNNT3
SE_02_104301970 chr11:1852978-1857672 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1970 1 208 34 0 14 100 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_038000099 chr11:1853006-1888892 Sample_02_0380 Skeletal muscle RH18 99 5 1265 119 9 156 1752 LSP1,MIR4298,TNNI2,SYT8,TNNT3
SE_01_006900155 chr11:1862153-1883876 Sample_01_0069 Adrenal gland adrenal-gland 155 1 808 62 6 124 1141 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_028000226 chr11:1862158-1883035 Sample_02_0280 Mammary gland SUM159_DMSO_24h 226 5 769 60 6 124 994 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_01_008401147 chr11:1862191-1883943 Sample_01_0084 Spleen spleen 1147 1 807 62 6 125 1155 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_086800234 chr11:1862430-1882616 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 234 6 751 60 6 112 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_041900708 chr11:1862456-1881402 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 708 7 708 58 6 103 899 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_01_009100452 chr11:1862462-1883432 Sample_01_0091 Uterus uterus 452 1 779 61 6 124 1033 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_086700205 chr11:1862467-1882598 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 205 5 751 60 6 112 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_111300922 chr11:1862508-1878959 Sample_02_1113 Bone U2OS 922 5 596 51 5 78 745 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_02_105600453 chr11:1862526-1878298 Sample_02_1056 Esophagus ChTRT 453 3 572 47 5 70 745 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_02_155400337 chr11:1862573-1884542 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 337 4 815 63 7 127 1279 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_01_007200329 chr11:1862593-1892193 Sample_01_0072 Breast epithelium breast-epithelium 329 2 1067 78 9 179 1722 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_142600538 chr11:1862602-1882688 Sample_02_1426 Shoulder fibroblast_341 538 7 751 59 6 111 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_01_006100034 chr11:1862622-1892106 Sample_01_0061 Prostate RWPE1 34 2 1060 76 9 178 1704 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_155200654 chr11:1862660-1882586 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 654 2 745 58 6 111 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_043700389 chr11:1862711-1878276 Sample_02_0437 Bone 143B 389 5 561 45 5 70 745 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_02_137200558 chr11:1862715-1878414 Sample_02_1372 Pancreas PSN1-untreated 558 4 567 46 5 71 745 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_01_010600177 chr11:1862765-1877031 Sample_01_0106 Adrenal gland adrenal gland 54y 177 4 516 44 5 45 745 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_02_118600862 chr11:1862766-1882533 Sample_02_1186 Brain GBM15 862 5 738 58 6 111 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_105700420 chr11:1862786-1878496 Sample_02_1057 Esophagus GihTRT 420 2 571 46 5 72 745 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_02_126801024 chr11:1862840-1877099 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 1024 2 516 44 5 46 745 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_02_037300080 chr11:1862889-1883944 Sample_02_0373 Skeletal muscle RMS206 80 2 786 60 6 124 1155 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_089600842 chr11:1862915-1883185 Sample_02_0896 Heart left ventricle_LV1294 842 3 756 58 6 123 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_072500332 chr11:1862949-1878172 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 332 3 551 45 5 70 745 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_02_155900231 chr11:1862991-1883909 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 231 3 786 60 6 124 1155 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_142000147 chr11:1862994-1878855 Sample_02_1420 Brain DIPG007 147 2 583 49 5 78 745 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_02_089201242 chr11:1863003-1883185 Sample_02_0892 Heart left ventricle_LV1215 1242 4 756 58 6 122 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_110700664 chr11:1863033-1883459 Sample_02_1107 Brain SK-N-AS 664 5 767 59 6 122 1041 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_089801449 chr11:1863040-1882674 Sample_02_0898 Heart left ventricle_LV1356 1449 4 739 58 6 110 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_156500081 chr11:1863053-1883774 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 81 6 781 60 6 122 1118 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_083900382 chr11:1863084-1882664 Sample_02_0839 Embryo hNPCs_K755R/+ 382 5 739 58 6 110 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_00_004300605 chr11:1863088-1883502 Sample_00_0043 Stomach stomach_96d 605 3 770 59 6 122 1050 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_091700654 chr11:1863099-1882662 Sample_02_0917 Heart left ventricle_DCM_LV1433 654 5 739 58 6 110 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_096600718 chr11:1863135-1883292 Sample_02_0966 Brain H3.3K27M_JN29-BS3 718 3 755 57 5 122 1007 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_124400437 chr11:1863148-1883131 Sample_02_1244 Brain KCNR_ATRA 437 4 749 56 5 122 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_091900530 chr11:1863154-1883131 Sample_02_0919 Heart left ventricle_DCM_LV1532 530 9 749 56 5 122 994 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_037500045 chr11:1863504-1891619 Sample_02_0375 Skeletal muscle RMS216 45 5 1022 73 8 174 1576 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_01_003701196 chr11:1863690-1882855 Sample_01_0037 Liver hepatocyte 1196 3 722 56 5 111 994 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_037600003 chr11:1866238-1882756 Sample_02_0376 Skeletal muscle RMS237 3 3 616 45 4 96 878 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_01_008501312 chr11:1867310-1883132 Sample_01_0085 Stomach stomach 1312 1 579 44 4 105 662 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_061100025 chr11:1867396-1883399 Sample_02_0611 Liposarcoma DDLPS_T1 25 1 590 44 4 105 693 LSP1,MIR7847,TNNI2,MIR4298,SYT8,TNNT3,LINC01150
SE_02_104901732 chr11:1867894-1873435 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1732 1 202 21 2 24 413 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_02_123900291 chr11:1869861-1878385 Sample_02_1239 Skin Waga_virus_positive 291 4 308 23 1 36 203 LSP1,TNNI2,MIR4298,SYT8,TNNT3,LINC01150,MIR7847
SE_02_039601646 chr11:1869879-1879186 Sample_02_0396 Skin NHEK-D 1646 1 341 26 1 45 203 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_036400101 chr11:1872542-1884636 Sample_02_0364 Skeletal muscle CTR 101 1 436 28 2 86 554 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_037800307 chr11:1874243-1880230 Sample_02_0378 Skeletal muscle SCMC 307 1 232 15 0 38 65 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_036900146 chr11:1874286-1883939 Sample_02_0369 Skeletal muscle RD 146 1 365 23 1 82 410 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_037900146 chr11:1874286-1883939 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 146 1 365 23 1 82 410 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_037200178 chr11:1874526-1883706 Sample_02_0372 Skeletal muscle RMS008 178 1 355 21 1 81 361 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_00_002600118 chr11:1874658-1883407 Sample_00_0026 Muscle of trunk muscle-of-trunk 118 1 336 21 1 78 282 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_034300328 chr11:1880142-1907448 Sample_02_0343 Bone marrow HSPC_A0 328 4 814 43 5 100 976 LSP1,TNNI2,MRPL23,SYT8,MIR4298,TNNT3
SE_02_012800527 chr11:1880767-1894678 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 527 6 442 24 4 79 909 LSP1,TNNI2,SYT8,MIR4298,TNNT3
SE_02_017600533 chr11:1882309-1893090 Sample_02_0176 Peripheral blood LOUCY 533 2 356 18 3 68 780 LSP1,TNNI2,SYT8,MIR4298,TNNT3
Genomic distribution of SEs associated with LSP1
Genome Browser

The strength of the tissue affected by the gene

Expression of LSP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)