SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000166159
Gene: LRTM2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:1820267-1836753 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_117300485 chr12:1712655-1839278 Sample_02_1173 Brain GBM01 485 41 3923 215 16 250 3319 LRTM2,CACNA2D4,ADIPOR2
SE_02_062500334 chr12:1737321-1796697 Sample_02_0625 Mammary gland WS8_4OHT 334 21 1608 104 7 107 1189 CACNA2D4,ADIPOR2,LRTM2
SE_02_062700300 chr12:1737692-1796789 Sample_02_0627 Mammary gland WS8_VEH 300 24 1601 104 7 107 1189 CACNA2D4,ADIPOR2,LRTM2
SE_02_157500191 chr12:1738144-1796883 Sample_02_1575 Mammary gland MCF7_Mock 191 28 1599 104 7 107 1189 CACNA2D4,ADIPOR2,LRTM2
SE_02_155100620 chr12:1752118-1797258 Sample_02_1551 Gastrointestinal Stromal MaMel 620 13 1209 80 6 103 1195 CACNA2D4,ADIPOR2,LRTM2
SE_02_018300179 chr12:1756530-1814025 Sample_02_0183 Skin SKMEL2 179 9 1663 110 11 139 2051 CACNA2D4,ADIPOR2,LRTM2
SE_02_127800651 chr12:1756657-1805527 Sample_02_1278 Chordoma UCH1_DMSO_48h 651 13 1342 102 10 118 1709 CACNA2D4,ADIPOR2,LRTM2
SE_02_149300742 chr12:1757127-1776850 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 742 4 449 28 2 7 45 ADIPOR2,LRTM2
SE_02_121300541 chr12:1757356-1839381 Sample_02_1213 Brain GBM31 541 21 2622 141 15 239 3246 LRTM2,CACNA2D4,ADIPOR2
SE_02_120300593 chr12:1757573-1805242 Sample_02_1203 Brain NB1 593 23 1307 97 10 118 1709 CACNA2D4,ADIPOR2,LRTM2
SE_02_021000186 chr12:1758068-1805066 Sample_02_0210 Lung MRC-5_N_1DPT 186 11 1286 93 9 118 1709 CACNA2D4,ADIPOR2,LRTM2
SE_02_021100289 chr12:1758112-1805280 Sample_02_0211 Lung MRC-5_NFD_1DPT 289 10 1293 95 10 118 1709 CACNA2D4,ADIPOR2,LRTM2
SE_02_120500952 chr12:1758270-1805159 Sample_02_1205 Brain NB3 952 23 1286 94 9 118 1709 CACNA2D4,ADIPOR2,LRTM2
SE_02_120400730 chr12:1758331-1813545 Sample_02_1204 Brain NB2 730 15 1595 103 10 139 2051 CACNA2D4,ADIPOR2,LRTM2
SE_02_108301070 chr12:1760420-1805105 Sample_02_1083 Macula macula 1070 17 1239 90 8 118 1709 CACNA2D4,ADIPOR2,LRTM2
SE_02_046500719 chr12:1761352-1814796 Sample_02_0465 Adipose subcutaneous adipocytes 719 33 1588 102 10 139 2051 CACNA2D4,ADIPOR2,LRTM2
SE_01_002100567 chr12:1764887-1786297 Sample_01_0021 Skin bipolar-neuron 567 5 524 33 3 46 310 ADIPOR2,LRTM2
SE_02_108200210 chr12:1769322-1848299 Sample_02_1082 Retina retina 210 26 2652 124 13 268 3543 LRTM2,CACNA2D4,ADIPOR2
SE_02_119601177 chr12:1772987-1813944 Sample_02_1196 Brain GBM32 1177 24 1278 84 9 132 2025 CACNA2D4,ADIPOR2,LRTM2
SE_01_008801161 chr12:1773494-1814224 Sample_01_0088 Tibial nerve tibial-nerve 1161 9 1275 83 9 132 2006 CACNA2D4,ADIPOR2,LRTM2
SE_02_100500292 chr12:1776356-1796800 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 292 4 605 44 4 89 1071 CACNA2D4,ADIPOR2,LRTM2
SE_02_104700696 chr12:1785954-1818157 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 696 15 1122 70 7 105 1792 CACNA2D4,ADIPOR2,LRTM2
SE_02_104301034 chr12:1789964-1822336 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1034 12 1133 72 7 84 1597 LRTM2,CACNA2D4
SE_02_058001204 chr12:1790511-1813907 Sample_02_0580 Blood HEL_sgSIK3e4 1204 11 809 52 6 54 1428 CACNA2D4,LRTM2
SE_02_050100044 chr12:1790545-1843636 Sample_02_0501 Blood HL-60_CTRL 44 17 1913 86 10 170 2709 LRTM2,CACNA2D4
SE_02_050200084 chr12:1791479-1829356 Sample_02_0502 Blood HL-60_PMA_16h 84 9 1408 79 9 99 1864 LRTM2,CACNA2D4
SE_02_104900984 chr12:1791593-1812048 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 984 12 694 47 6 40 1428 CACNA2D4,LRTM2
SE_02_038000057 chr12:1792238-1861850 Sample_02_0380 Skeletal muscle RH18 57 5 2462 93 11 206 3237 CACNA2D4,LRTM2
SE_02_104800786 chr12:1792469-1813882 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 786 11 741 45 6 54 1345 CACNA2D4,LRTM2
SE_02_004300632 chr12:1793346-1796167 Sample_02_0043 Embryo endodermal CyT49_ES_D2 632 2 105 8 0 11 277 CACNA2D4,LRTM2
SE_02_107000223 chr12:1793563-1811889 Sample_02_1070 Blood SupT1_WT 223 5 634 41 5 40 1156 CACNA2D4,LRTM2
SE_02_087300464 chr12:1793639-1811010 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 464 8 592 40 5 39 1049 CACNA2D4,LRTM2
SE_02_152900593 chr12:1794135-1822899 Sample_02_1529 Peripheral blood neutrophils_0BC75 593 8 1013 60 6 80 1261 LRTM2,CACNA2D4
SE_02_033200306 chr12:1795109-1816957 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 306 2 756 43 5 54 1092 CACNA2D4,LRTM2
SE_02_025600259 chr12:1795125-1817614 Sample_02_0256 Peripheral blood MV411 259 3 779 45 5 54 1092 CACNA2D4,LRTM2
SE_02_125100256 chr12:1795132-1817049 Sample_02_1251 Bone marrow RS4_11_AZD1775 _10h 256 14 759 43 5 54 1090 CACNA2D4,LRTM2
SE_02_033700088 chr12:1795135-1814718 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 88 2 684 37 5 50 1090 CACNA2D4,LRTM2
SE_02_033400343 chr12:1795249-1816947 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 343 2 751 43 5 54 1071 CACNA2D4,LRTM2
SE_02_124900097 chr12:1795250-1851392 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 97 28 2018 73 9 184 2563 LRTM2,CACNA2D4
SE_02_033500329 chr12:1795352-1816803 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 329 2 737 43 5 52 1051 CACNA2D4,LRTM2
SE_02_111900216 chr12:1795360-1858168 Sample_02_1119 Blood KBM7 216 25 2226 79 10 193 2741 LRTM2,CACNA2D4
SE_02_033100273 chr12:1795370-1814955 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 273 2 681 37 5 47 1050 CACNA2D4,LRTM2
SE_02_058100267 chr12:1795383-1816628 Sample_02_0581 Blood MOLM13_empty_HG 267 9 727 42 5 51 1049 CACNA2D4,LRTM2
SE_02_036300317 chr12:1795386-1807260 Sample_02_0363 Haematopoietic and lymphoid tissue 697 317 3 370 32 4 26 707 CACNA2D4,LRTM2
SE_02_034200968 chr12:1795389-1814700 Sample_02_0342 Liver HSPCs_F0 968 4 676 37 5 47 1049 CACNA2D4,LRTM2
SE_02_125200325 chr12:1795429-1814331 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 325 17 654 37 5 47 1041 CACNA2D4,LRTM2
SE_02_125000279 chr12:1795435-1814102 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 279 12 647 37 5 47 1041 CACNA2D4,LRTM2
SE_02_104600277 chr12:1795472-1890411 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 277 45 3226 99 19 268 3828 LRTM2,CACNA2D4,LINC00940
SE_02_010000720 chr12:1795473-1814485 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 720 4 661 37 5 47 1037 CACNA2D4,LRTM2
SE_02_058200340 chr12:1795520-1816622 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 340 7 720 42 5 51 1021 CACNA2D4,LRTM2
SE_02_036000177 chr12:1795568-1814111 Sample_02_0360 Haematopoietic and lymphoid tissue SEM 177 3 641 37 5 47 1012 CACNA2D4,LRTM2,ADIPOR2
SE_02_046100100 chr12:1795576-1814829 Sample_02_0461 Blood MV-4-11-B cells 100 6 668 37 5 47 1012 CACNA2D4,LRTM2
SE_02_133100336 chr12:1795580-1836340 Sample_02_1331 Blood Molm13_CTRL 336 13 1503 70 9 137 2076 LRTM2,CACNA2D4
SE_02_057700453 chr12:1795634-1816516 Sample_02_0577 Blood MOLM13_empty 453 10 710 42 5 50 999 CACNA2D4,LRTM2
SE_02_134100421 chr12:1795649-1815607 Sample_02_1341 Blood MV411 421 10 688 40 5 48 994 CACNA2D4,LRTM2
SE_02_033300281 chr12:1795651-1816734 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 281 2 718 42 5 50 993 CACNA2D4,LRTM2
SE_02_138800700 chr12:1795694-1813816 Sample_02_1388 Peripheral blood JB6_ALK+ 700 5 626 36 5 45 988 CACNA2D4,LRTM2,ADIPOR2
SE_02_062200263 chr12:1795706-1815302 Sample_02_0622 Blood EOL1_Naive 263 7 679 39 5 45 984 CACNA2D4,LRTM2
SE_02_057500519 chr12:1795725-1816650 Sample_02_0575 Blood MOLM13_sgLKB1e2 519 10 713 42 5 47 980 CACNA2D4,LRTM2
SE_02_146000893 chr12:1795732-1814893 Sample_02_1460 Blood Mutz-3 893 7 664 37 5 43 980 CACNA2D4,LRTM2
SE_02_138600095 chr12:1795735-1816589 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 95 11 711 42 5 47 978 CACNA2D4,LRTM2
SE_02_099400532 chr12:1795739-1816497 Sample_02_0994 Blood MOLM13_SIK3TQ 532 11 707 42 5 47 977 CACNA2D4,LRTM2
SE_02_057400471 chr12:1795744-1816581 Sample_02_0574 Blood MOLM-13_sgNeg2 471 5 710 42 5 47 977 CACNA2D4,LRTM2
SE_02_132000276 chr12:1795770-1813926 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 276 6 627 37 5 43 976 CACNA2D4,LRTM2
SE_02_133200735 chr12:1795784-1815858 Sample_02_1332 Blood Monomac6_CTRL 735 7 691 40 5 45 971 CACNA2D4,LRTM2
SE_02_132100317 chr12:1795794-1813735 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 317 4 622 36 5 43 970 CACNA2D4,LRTM2,ADIPOR2
SE_02_126801050 chr12:1795797-1813554 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 1050 5 609 36 5 43 970 CACNA2D4,LRTM2
SE_02_081601694 chr12:1795802-1818364 Sample_02_0816 Ovary Clear cell ovarian cancer 1694 7 796 47 5 47 970 CACNA2D4,LRTM2
SE_02_132200205 chr12:1795810-1813932 Sample_02_1322 Connective Tissue HT1080_WT 205 4 625 37 5 43 968 CACNA2D4,LRTM2,ADIPOR2
SE_02_099500511 chr12:1795821-1816529 Sample_02_0995 Blood MOLM-13_empty vector 511 9 706 42 5 47 964 CACNA2D4,LRTM2
SE_02_057800542 chr12:1795854-1817355 Sample_02_0578 Blood MOLM-13_sgSIK3e4 542 10 746 45 5 47 959 CACNA2D4,LRTM2
SE_02_076900371 chr12:1795857-1840320 Sample_02_0769 Ovary HEYA8 371 15 1636 71 9 144 2153 LRTM2,CACNA2D4
SE_00_000600636 chr12:1795912-1814756 Sample_00_0006 Blood CD14-positive-monocyte 636 2 658 37 5 43 940 CACNA2D4,LRTM2
SE_02_046300079 chr12:1795921-1814550 Sample_02_0463 Blood OCI-AML3 cells 79 16 649 37 5 43 939 CACNA2D4,LRTM2
SE_02_103602431 chr12:1796074-1798204 Sample_02_1036 Mammary gland HCC70_XY018 2431 3 62 5 0 4 142 CACNA2D4,LRTM2,ADIPOR2
SE_02_025500576 chr12:1796085-1814369 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 576 2 636 36 5 43 935 CACNA2D4,LRTM2
SE_02_153000641 chr12:1796090-1824965 Sample_02_1530 Peripheral blood neutrophils_0BA0X 641 9 1002 54 6 75 1104 LRTM2,CACNA2D4
SE_02_134700063 chr12:1796100-1814086 Sample_02_1347 Leukophereses leukophereses_p401 63 3 625 36 5 43 935 CACNA2D4,LRTM2
SE_02_135000195 chr12:1796204-1814671 Sample_02_1350 Leukophereses leukophereses_p456 195 6 645 36 5 43 935 CACNA2D4,LRTM2
SE_02_018200206 chr12:1796219-1816129 Sample_02_0182 melanoma LOX-IMVI 206 4 685 39 5 46 935 CACNA2D4,LRTM2
SE_02_034700318 chr12:1796224-1813855 Sample_02_0347 Blood AML11 318 3 613 35 5 43 935 CACNA2D4,LRTM2
SE_02_134200149 chr12:1796259-1814292 Sample_02_1342 Blood NB4 149 7 627 36 5 43 935 CACNA2D4,LRTM2
SE_02_134800220 chr12:1796286-1814373 Sample_02_1348 Leukophereses leukophereses_p408 220 3 630 36 5 43 935 CACNA2D4,LRTM2
SE_02_102800185 chr12:1796288-1816481 Sample_02_1028 Blood HL-60_WT 185 6 692 41 5 47 935 CACNA2D4,LRTM2
SE_02_044800562 chr12:1796301-1813878 Sample_02_0448 Bone MNNG 562 5 610 36 5 43 935 CACNA2D4,LRTM2
SE_02_134500445 chr12:1796301-1816218 Sample_02_1345 Leukophereses leukophereses_p358 445 10 686 39 5 46 935 CACNA2D4,LRTM2
SE_02_131400549 chr12:1796315-1815026 Sample_02_1314 Brain hMGLs_TREM2-KO 549 6 650 37 5 43 935 CACNA2D4,LRTM2
SE_02_131700445 chr12:1796344-1814321 Sample_02_1317 Brain hMGLs_SORL1-KO 445 7 625 36 5 43 935 CACNA2D4,LRTM2
SE_02_139400232 chr12:1796345-1815804 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 232 5 673 39 5 45 935 CACNA2D4,LRTM2,ADIPOR2
SE_02_139000290 chr12:1796346-1842959 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 290 8 1692 70 9 159 2216 LRTM2,CACNA2D4
SE_02_137200229 chr12:1796352-1815838 Sample_02_1372 Pancreas PSN1-untreated 229 5 674 39 5 45 935 CACNA2D4,LRTM2
SE_02_134900397 chr12:1796357-1813769 Sample_02_1349 Leukophereses leukophereses_p411 397 3 606 35 5 43 935 CACNA2D4,LRTM2
SE_02_092600118 chr12:1796357-1816991 Sample_02_0926 Blood NB4_1 118 27 717 42 5 47 935 CACNA2D4,LRTM2
SE_02_133000146 chr12:1796359-1847766 Sample_02_1330 Blood AMU-AML1 146 14 1883 72 9 172 2427 LRTM2,CACNA2D4
SE_02_107100360 chr12:1796362-1811910 Sample_02_1071 Blood Jurkat_WT 360 3 527 33 5 29 927 CACNA2D4,LRTM2
SE_02_109800465 chr12:1796364-1816647 Sample_02_1098 Blood THP1_DMSO_noPMA 465 3 695 41 5 47 935 CACNA2D4,LRTM2
SE_02_087100243 chr12:1796640-1811077 Sample_02_0871 Colon HCT116_GLIS2.2-DMSO 243 3 485 33 5 28 825 CACNA2D4,LRTM2
SE_02_099300455 chr12:1796739-1816625 Sample_02_0993 Blood MOLM-13_empty 455 10 683 40 5 47 935 CACNA2D4,LRTM2
SE_02_153700675 chr12:1804629-1813984 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 675 2 349 15 2 23 342 CACNA2D4,LRTM2,ADIPOR2
SE_02_046400288 chr12:1809197-1813337 Sample_02_0464 Bone marrow MOLM-13 288 7 165 3 0 20 337 CACNA2D4,LRTM2,ADIPOR2
SE_02_153400735 chr12:1809576-1814029 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 735 1 182 4 0 20 276 CACNA2D4,LRTM2,ADIPOR2
SE_02_153600368 chr12:1809657-1813982 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 368 1 181 4 0 20 264 CACNA2D4,LRTM2
SE_02_036300069 chr12:1821853-1848239 Sample_02_0363 Haematopoietic and lymphoid tissue 697 69 6 1007 21 3 109 1323 CACNA2D4,LRTM2
SE_02_128500022 chr12:1822066-1863036 Sample_02_1285 Lung NCI-H2171_p8-15 22 12 1467 32 4 122 1695 LRTM2,CACNA2D4
SE_02_046200020 chr12:1822204-1848433 Sample_02_0462 Lung NCI-H2171 cells 20 12 1005 20 3 99 1323 LRTM2,CACNA2D4
SE_02_123600165 chr12:1826689-1838145 Sample_02_1236 Skin MKL1_virus_positive 165 5 486 8 1 63 1026 LRTM2,CACNA2D4
SE_02_109700349 chr12:1826914-1851404 Sample_02_1097 Haematopoietic and lymphoid tissue 697 349 17 910 9 1 100 1323 LRTM2,CACNA2D4
SE_02_147500301 chr12:1828458-1877523 Sample_02_1475 Bone CHLA-25 301 13 1622 27 3 140 1556 LRTM2,CACNA2D4
SE_02_066300522 chr12:1835042-1849101 Sample_02_0663 Thyroid TT 522 5 482 4 1 43 674 LRTM2,CACNA2D4
Genomic distribution of SEs associated with LRTM2
Genome Browser

The strength of the tissue affected by the gene

Expression of LRTM2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)