SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000198799
Gene: LRIG2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:113073198-113132260 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_003600172 chr1:113021323-113058020 Sample_02_0036 Embryo H7 172 8 892 113 0 62 68 LRIG2
SE_02_004001309 chr1:113021447-113044238 Sample_02_0040 Embryo PFG 1309 3 551 82 0 42 0 LRIG2
SE_02_006700307 chr1:113025995-113045055 Sample_02_0067 Embryo AzH-G2/M 307 2 468 70 0 39 0 LRIG2
SE_02_006500470 chr1:113026032-113044920 Sample_02_0065 Embryo KO2-Late_G1 470 2 465 70 0 39 0 LRIG2
SE_02_006600259 chr1:113026347-113044539 Sample_02_0066 Embryo AzL-S_phase 259 2 444 70 0 39 0 LRIG2
SE_02_004200183 chr1:113026357-113044504 Sample_02_0042 Embryo endodermal CyT49_ES_D0 183 2 444 70 0 39 0 LRIG2
SE_02_006400286 chr1:113026395-113045447 Sample_02_0064 Embryo DN-Early_G1 286 2 461 70 0 39 0 LRIG2
SE_01_003100087 chr1:113026642-113044150 Sample_01_0031 Skin GM23338 87 2 429 69 0 39 0 LRIG2
SE_02_003800714 chr1:113026732-113057975 Sample_02_0038 Embryo DE 714 4 763 99 0 59 68 LRIG2
SE_02_041800137 chr1:113026931-113044388 Sample_02_0418 Embryo H9_Null+EZH2 137 3 425 70 0 38 0 LRIG2
SE_00_002400482 chr1:113026961-113044532 Sample_00_0024 Embryo mesendoderm 482 2 426 70 0 37 0 LRIG2
SE_02_004300922 chr1:113026973-113044231 Sample_02_0043 Embryo endodermal CyT49_ES_D2 922 3 417 69 0 37 0 LRIG2
SE_02_033000925 chr1:113036346-113059719 Sample_02_0330 Endoderm MHG 925 4 587 62 0 59 68 LRIG2
SE_02_030400538 chr1:113038582-113074803 Sample_02_0304 Neuroblastoma N206 538 3 895 90 0 84 275 LRIG2
SE_00_001200131 chr1:113040780-113057982 Sample_00_0012 Embryo H1-hESC 131 3 430 39 0 46 68 LRIG2
SE_01_003300500 chr1:113041189-113045011 Sample_01_0033 Embryo H9 500 1 106 10 0 26 0 LRIG2
SE_00_001300134 chr1:113041491-113054764 Sample_00_0013 Embryo H9 134 2 327 27 0 34 68 LRIG2
SE_02_041600039 chr1:113041701-113044106 Sample_02_0416 Embryo H9_Het 39 2 64 4 0 26 0 LRIG2
SE_02_103501774 chr1:113063378-113106748 Sample_02_1035 Mammary gland HCC70_Vehicle 1774 18 1076 95 0 79 525 LRIG2,LOC100996251
SE_02_009500150 chr1:113190949-113211788 Sample_02_0095 Mammary gland MDA-MB-468 150 3 618 76 0 43 386 LRIG2
SE_02_040400496 chr1:113195180-113210619 Sample_02_0404 Mammary gland ZR-75-1_2 496 3 430 52 0 31 386 LRIG2
SE_02_003900570 chr1:113196163-113235502 Sample_02_0039 Embryo AFG 570 7 1083 69 1 73 386 LRIG2
SE_00_002401207 chr1:113216247-113234881 Sample_00_0024 Embryo mesendoderm 1207 6 488 14 0 47 0 LRIG2
SE_02_003800981 chr1:113216286-113224834 Sample_02_0038 Embryo DE 981 4 220 4 0 20 0 LRIG2
SE_02_004300389 chr1:113216409-113224706 Sample_02_0043 Embryo endodermal CyT49_ES_D2 389 4 216 4 0 20 0 LRIG2
Genomic distribution of SEs associated with LRIG2
Genome Browser

The strength of the tissue affected by the gene

Expression of LRIG2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)