SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: LOC642846 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122100314 chr12:9284030-9311077 Sample_02_1221 Bone marrow KMS11 314 10 599 69 1 75 1577 LOC642846,LINC00987,A2MP1
SE_02_104301406 chr12:9285704-9350686 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1406 14 1884 269 5 102 2392 LOC642846,LINC00987,LOC101928030,LOC101930452
SE_02_104601491 chr12:9285711-9335488 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1491 20 1426 206 4 102 2155 LOC642846,LINC00987,LOC101928030,LOC101930452,DDX12P
SE_02_104701557 chr12:9285714-9336283 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1557 24 1451 212 4 102 2271 LOC642846,LINC00987,LOC101928030,LOC101930452
SE_02_104800649 chr12:9285715-9331940 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 649 19 1315 197 4 102 2115 LOC642846,LINC00987,LOC101928030,LOC101930452
SE_02_107800085 chr12:9285759-9343895 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 85 18 1680 241 5 102 2342 LOC642846,LINC00987,LOC101928030,LOC101930452
SE_02_018500093 chr12:9306105-9382584 Sample_02_0185 Skin UACC257 93 17 2467 375 4 58 1196 LOC642846
SE_02_149301082 chr12:9306313-9318959 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 1082 3 426 52 1 57 803 LOC642846,LOC101930452
SE_02_006800245 chr12:9331264-9367779 Sample_02_0068 Skin A375_DMSO 245 15 1130 149 1 0 277 LOC642846
SE_02_035900236 chr12:9331305-9369302 Sample_02_0359 Colon Colo741 236 4 1165 155 1 0 277 LOC642846
SE_02_018300172 chr12:9331307-9373152 Sample_02_0183 Skin SKMEL2 172 7 1249 168 1 0 277 LOC642846
SE_02_018100046 chr12:9331341-9373253 Sample_02_0181 melanoma COLO679 46 7 1253 170 1 0 277 LOC642846
SE_02_040500055 chr12:9331386-9366419 Sample_02_0405 Mammary gland ZR-75-30_KO 55 6 1073 134 1 0 277 LOC642846
SE_02_018000030 chr12:9331401-9373129 Sample_02_0180 melanoma CJM 30 7 1245 166 1 0 277 LOC642846
SE_02_042300229 chr12:9331902-9367025 Sample_02_0423 Skin A375 229 12 1074 138 1 0 277 LOC642846
SE_02_040600170 chr12:9332462-9351169 Sample_02_0406 Mammary gland ZR-75-30_parental 170 7 563 74 1 0 277 LOC642846
Genomic distribution of SEs associated with LOC642846
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC642846

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)