SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: LOC389602 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_096800216 chr7:155882297-155900139 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 216 8 662 19 1 8 0 LOC389602
SE_02_085700379 chr7:155883144-155898361 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 379 3 576 17 1 8 0 LOC389602
SE_02_080800813 chr7:155883535-155928537 Sample_02_0808 Ovary RMG1_ARID1A KO 813 31 1776 32 5 69 0 LOC389602
SE_02_158400077 chr7:155935303-155964644 Sample_02_1584 Brain U87 GBM_Mock 77 5 1042 56 3 28 0 LOC389602
SE_02_102900392 chr7:155944392-155973857 Sample_02_1029 Colon HCT116 392 12 1055 39 5 17 0 LOC389602
SE_02_085700876 chr7:155944407-155963057 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 876 4 668 28 1 15 0 LOC389602
SE_02_048100569 chr7:155945274-155965685 Sample_02_0481 Mammary gland MDA-MB231 569 3 736 28 2 15 0 LOC389602
SE_02_080800592 chr7:155945700-155971152 Sample_02_0808 Ovary RMG1_ARID1A KO 592 18 914 35 4 15 0 LOC389602
SE_02_099100528 chr7:155945774-155964071 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 528 5 666 27 2 15 0 LOC389602
SE_02_099200482 chr7:155946287-155963489 Sample_02_0992 Mammary gland MDA-MB-231_Par 482 4 630 25 2 15 0 LOC389602
SE_02_122800356 chr7:155946496-155964970 Sample_02_1228 Mammary gland MDA-MB-231_2 356 7 672 26 2 15 0 LOC389602
SE_02_113701404 chr7:155946548-155965024 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1404 4 673 26 2 15 0 LOC389602
SE_02_126701528 chr7:155946559-155952972 Sample_02_1267 Bone Im-GCT-4072_G34W 1528 2 226 8 0 10 0 LOC389602
SE_02_135100765 chr7:155946690-155963289 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 765 4 613 24 2 15 0 LOC389602
SE_02_084600651 chr7:155946693-155964745 Sample_02_0846 Mammary gland MDA-MB-231_untreat 651 7 665 26 2 15 0 LOC389602
SE_02_051600604 chr7:155946860-155965188 Sample_02_0516 Esophagus KYSE70 604 5 676 26 2 15 0 LOC389602
SE_02_124800473 chr7:155946863-155954729 Sample_02_1248 Bladder RT4 473 2 311 10 0 10 0 LOC389602
SE_02_050500607 chr7:155946878-155965188 Sample_02_0505 Esophagus KYSE70_1 607 5 676 26 2 15 0 LOC389602
SE_02_088400401 chr7:155946916-155964070 Sample_02_0884 Colon LoVo 401 4 639 26 2 15 0 LOC389602
SE_02_065900465 chr7:155947111-155973087 Sample_02_0659 Lung H23 465 8 942 34 5 17 0 LOC389602
SE_02_153700325 chr7:155947217-155964698 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 325 3 655 26 2 15 0 LOC389602
SE_02_084700229 chr7:155947511-155964772 Sample_02_0847 Mammary gland LM2-4175 229 6 645 26 2 15 0 LOC389602
SE_02_136700414 chr7:155948457-155963326 Sample_02_1367 Pancreas Capan1-untreated 414 6 568 23 2 15 0 LOC389602
SE_02_070500429 chr7:155949338-155963775 Sample_02_0705 Pancreas AsPC1 WT 429 2 541 20 2 15 0 LOC389602
SE_02_071100576 chr7:155949384-155962457 Sample_02_0711 Pancreas hN35_organoid 576 7 494 19 1 15 0 LOC389602
SE_02_071700638 chr7:155949414-155965205 Sample_02_0717 Pancreas HPAFII_GFP_DOX 638 6 592 22 2 15 0 LOC389602
SE_02_071400288 chr7:155949517-155963503 Sample_02_0714 Pancreas SUIT2_MTV 288 4 531 20 2 15 0 LOC389602
SE_02_136500200 chr7:155949639-155963978 Sample_02_1365 Pancreas AsPC1-untreated 200 3 541 22 2 15 0 LOC389602
SE_02_072400360 chr7:155949777-155963462 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 360 4 523 20 2 15 0 LOC389602
SE_02_070600321 chr7:155949853-155962385 Sample_02_0706 Pancreas SUIT2 WT 321 6 481 18 1 15 0 LOC389602
SE_02_125800739 chr7:155949914-155964293 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 739 3 545 21 2 15 0 LOC389602
SE_02_070900554 chr7:155950087-155963786 Sample_02_0709 Pancreas hT85_organoid 554 2 521 19 2 15 0 LOC389602
SE_02_132300410 chr7:155950277-155966348 Sample_02_1323 Colon DLD1_WT 410 2 608 22 2 15 0 LOC389602
SE_01_011400276 chr7:155950283-155965299 Sample_01_0114 Colon HCT116_encode 276 6 569 21 2 15 0 LOC389602
SE_02_137200220 chr7:155950299-155964876 Sample_02_1372 Pancreas PSN1-untreated 220 3 556 21 2 15 0 LOC389602
SE_02_123300711 chr7:155950319-155953383 Sample_02_1233 Lung PC9_miR-4497 mimic 711 1 134 3 0 10 0 LOC389602
SE_02_137100858 chr7:155950337-155963356 Sample_02_1371 Pancreas Patu899S-untreated 858 3 503 19 2 15 0 LOC389602
SE_02_071500477 chr7:155950354-155963322 Sample_02_0715 Pancreas SUIT2_TP63dN 477 4 501 19 2 15 0 LOC389602
SE_02_123100611 chr7:155950420-155953410 Sample_02_1231 Lung PC9_siMED13L-1 611 1 133 3 0 10 0 LOC389602
SE_02_045800237 chr7:155950451-155966025 Sample_02_0458 Colon HCT116 DMSO 237 6 595 22 2 15 0 LOC389602
SE_02_123200517 chr7:155950497-155953143 Sample_02_1232 Lung PC9_siMED13L-2 517 1 117 3 0 10 0 LOC389602
SE_02_047700815 chr7:155950547-155963438 Sample_02_0477 Colon intestinal epithelial organoids_139a 815 2 501 19 2 15 0 LOC389602
SE_02_147000377 chr7:155950817-155965412 Sample_02_1470 Umbilical Vein H441 377 3 555 21 2 15 0 LOC389602
SE_02_104601126 chr7:155951864-156004810 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1126 19 2001 28 7 13 0 LOC389602
SE_02_087300303 chr7:155952076-155973888 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 303 5 791 26 5 8 0 LOC389602
SE_02_087200440 chr7:155952120-155973870 Sample_02_0872 Colon HCT116_siCtrl-5FU 440 4 789 26 5 7 0 LOC389602
SE_02_104801746 chr7:155970395-156000364 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1746 6 1113 1 3 6 0 LOC389602
SE_02_124800670 chr7:155993694-156004505 Sample_02_1248 Bladder RT4 670 4 421 1 0 0 0 LOC389602
SE_02_104600632 chr7:156018000-156129905 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 632 30 4131 17 10 87 0 LOC389602
Genomic distribution of SEs associated with LOC389602
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC389602

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)