SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: LOC100506585 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104600009 chr7:157542587-157907749 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 9 139 13254 232 23 584 2096 LOC100506585,PTPRN2,MIR153-2
SE_02_104700140 chr7:157752050-157908315 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 140 58 6129 80 4 195 1156 LOC100506585,PTPRN2
SE_02_093200213 chr7:157816868-157862096 Sample_02_0932 Embryo H9 WT_1 213 9 1774 40 0 55 364 LOC100506585,PTPRN2
SE_02_096300442 chr7:157825558-157852568 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 442 4 1084 21 0 38 0 PTPRN2,LOC100506585
SE_02_083800110 chr7:157834521-157852498 Sample_02_0838 Embryo hNPCs_WT 110 5 725 15 0 38 0 PTPRN2,LOC100506585
SE_02_068100265 chr7:157834531-157852032 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 265 7 709 13 0 37 0 PTPRN2,LOC100506585
SE_00_004800263 chr7:157834606-157851877 Sample_00_0048 Embryo neuronal stem cell originated from H1 263 8 698 12 0 37 0 PTPRN2,LOC100506585
SE_02_141700278 chr7:157840195-157851752 Sample_02_1417 Brain SF7761 278 2 496 10 0 37 0 PTPRN2,LOC100506585
SE_02_093400426 chr7:157840392-157851880 Sample_02_0934 Embryo H7-WT 426 3 488 10 0 37 0 PTPRN2,LOC100506585
SE_02_104800905 chr7:157865436-157911262 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 905 12 1669 15 3 102 222 LOC100506585,PTPRN2
SE_02_104600216 chr7:157924015-158078809 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 216 54 5719 51 17 131 506 PTPRN2,LOC100506585
SE_02_103900176 chr7:157961852-157997555 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 176 7 1352 21 2 24 0 PTPRN2,LOC100506585
SE_02_122100241 chr7:157977568-158025276 Sample_02_1221 Bone marrow KMS11 241 12 1711 20 1 48 0 PTPRN2,LOC100506585
SE_02_097000261 chr7:157987388-158032827 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 261 13 1580 21 2 39 0 PTPRN2,LOC100506585
SE_02_095800293 chr7:157987445-158043842 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 293 10 1940 23 2 41 0 PTPRN2,LOC100506585,MIR595
SE_02_077500220 chr7:157989109-158031456 Sample_02_0775 Pancreas EndoC-BH1_SE 220 15 1488 19 2 39 0 PTPRN2,LOC100506585,MIR595
SE_02_096100056 chr7:157991073-158032263 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 56 10 1431 19 2 39 0 PTPRN2,LOC100506585
SE_02_077600189 chr7:157996169-158033156 Sample_02_0776 Pancreas EndoC-BH1 189 14 1250 17 2 39 0 PTPRN2,LOC100506585,MIR153-2
SE_02_067900524 chr7:157997226-158010309 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 524 6 449 2 1 7 0 PTPRN2,LOC100506585
SE_02_067800213 chr7:157997718-158016410 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 213 7 625 5 1 7 0 PTPRN2,LOC100506585
SE_02_129000319 chr7:158000156-158030302 Sample_02_1290 Lung NCI-H69_p8-15 319 9 1029 15 1 39 0 PTPRN2,LOC100506585
SE_02_068701180 chr7:158000229-158033322 Sample_02_0687 Lung NCI-H146_no infection 1180 13 1119 16 1 35 0 PTPRN2,LOC100506585,MIR595
SE_02_103900131 chr7:158017333-158042390 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 131 13 846 14 1 6 0 PTPRN2,LOC100506585
SE_02_138800598 chr7:158022412-158048221 Sample_02_1388 Peripheral blood JB6_ALK+ 598 6 835 9 2 8 0 PTPRN2,LOC100506585,MIR153-2
SE_02_104500204 chr7:158024493-158048018 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 204 20 772 9 2 8 0 PTPRN2,LOC100506585
SE_02_068400458 chr7:158043358-158079342 Sample_02_0684 Lung DMS79 458 12 1483 4 3 51 506 PTPRN2,LOC100506585,MIR595
SE_02_113600615 chr7:158089472-158111126 Sample_02_1136 Bone U2OS-anaphase/telophase 615 8 719 7 1 21 100 PTPRN2,LOC100506585,NCAPG2
SE_02_111500481 chr7:158091890-158112346 Sample_02_1115 Liver HepG2 481 7 708 6 2 22 100 PTPRN2,LOC100506585,NCAPG2
SE_02_111300734 chr7:158092363-158111232 Sample_02_1113 Bone U2OS 734 7 655 6 1 20 100 PTPRN2,LOC100506585,NCAPG2
SE_02_128300566 chr7:158106565-158112006 Sample_02_1283 Lung NCI-H2107_p8-15 566 2 226 2 1 7 100 PTPRN2,LOC100506585
SE_02_077500286 chr7:158128953-158164782 Sample_02_0775 Pancreas EndoC-BH1_SE 286 11 1924 55 5 18 310 PTPRN2,LOC100506585,MIR595
SE_02_124200099 chr7:158151566-158190790 Sample_02_1242 Skin UISO_virus_negative 99 17 1625 34 3 15 165 PTPRN2,LOC100506585
Genomic distribution of SEs associated with LOC100506585
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC100506585

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)