SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: LOC100505878 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_063200443 chr5:86805794-86822700 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 443 4 404 11 0 34 0 LOC100505878,MIR3607
SE_02_063400266 chr5:86806066-86822507 Sample_02_0634 Gastrointestinal Stromal GIST-48B_JQ1 266 4 396 11 0 33 0 LOC100505878
SE_02_151400720 chr5:86856846-86879258 Sample_02_1514 Lung Differentiated AT1-like cells 720 4 620 10 4 68 0 LOC100505878
SE_02_063300444 chr5:86858555-86891624 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 444 12 920 26 12 79 0 LOC100505878,LOC101929380
SE_02_063400260 chr5:86858939-86892720 Sample_02_0634 Gastrointestinal Stromal GIST-48B_JQ1 260 14 935 27 12 77 0 LOC100505878
SE_02_063200459 chr5:86859863-86892295 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 459 14 896 26 11 77 0 LOC100505878,MIR4280
SE_02_154700129 chr5:86865270-86913029 Sample_02_1547 Gastrointestinal Stromal GIST-48B 129 17 1292 35 12 91 0 LOC100505878,MIR4280
SE_02_116200261 chr5:86865592-86914565 Sample_02_1162 Stomach YCC11 261 18 1319 35 12 90 0 LOC100505878
SE_02_075200999 chr5:86870476-86899139 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 999 7 756 25 11 44 0 LOC100505878,MIR3607
SE_02_063400312 chr5:86905720-86930646 Sample_02_0634 Gastrointestinal Stromal GIST-48B_JQ1 312 8 710 9 1 47 0 LOC100505878
Genomic distribution of SEs associated with LOC100505878
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC100505878

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)