Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000005156
Gene: LIG3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:34980512-35009743 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_057400646 chr17:34973958-34993138 Sample_02_0574 Blood MOLM-13_sgNeg2 646 7 455 21 2 114 673 LIG3,CCT6B,ZNF830
SE_02_066900630 chr17:34979213-35006779 Sample_02_0669 Prostate prostate cancer_DSG 630 6 732 33 6 174 1803 LIG3,CCT6B,ZNF830
SE_02_058000578 chr17:34979216-34998774 Sample_02_0580 Blood HEL_sgSIK3e4 578 6 482 20 5 150 1110 LIG3,CCT6B,ZNF830
SE_02_057600653 chr17:34979247-34989767 Sample_02_0576 Blood HEL_sgLKB1e2 653 5 230 9 2 62 381 LIG3,CCT6B,ZNF830
SE_02_014400570 chr17:34979286-34998404 Sample_02_0144 Peripheral blood MV411_DMSO 570 3 474 20 5 147 1034 LIG3,ZNF830,CCT6B
SE_02_142600769 chr17:34979414-34982512 Sample_02_1426 Shoulder fibroblast_341 769 1 72 3 0 17 144 LIG3,CCT6B,ZNF830
SE_02_142700859 chr17:34979467-34982778 Sample_02_1427 Shoulder fibroblast_343 859 1 79 3 0 19 144 LIG3,CCT6B,ZNF830
SE_02_057900589 chr17:34979499-34998822 Sample_02_0579 Blood HEL_sgNeg2 589 4 484 20 5 150 1116 LIG3,CCT6B,ZNF830
SE_01_008000453 chr17:34979501-35004000 Sample_01_0080 Prostate prostate 453 5 651 27 5 166 1612 LIG3,ZNF830,CCT6B
SE_02_057700580 chr17:34979561-34993419 Sample_02_0577 Blood MOLM13_empty 580 5 350 16 2 106 673 LIG3,CCT6B,ZNF830
SE_02_143400206 chr17:34979615-35057777 Sample_02_1434 Trophoblast trophoblast stem cells 206 14 1957 87 9 304 2620 RFFL,RAD51L3-RFFL,LIG3,CCT6B,ZNF830
SE_02_058100639 chr17:34979622-34993236 Sample_02_0581 Blood MOLM13_empty_HG 639 4 347 16 2 106 673 LIG3,CCT6B,ZNF830
SE_02_057800639 chr17:34979691-34993435 Sample_02_0578 Blood MOLM-13_sgSIK3e4 639 7 350 16 2 106 673 LIG3,CCT6B,ZNF830
SE_02_025500585 chr17:34979727-34997779 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 585 5 459 20 5 141 939 LIG3,ZNF830,CCT6B
SE_02_143100324 chr17:34979763-35006112 Sample_02_1431 Blood T cell 324 4 710 33 6 173 1803 LIG3,CCT6B,ZNF830
SE_02_074600830 chr17:34979771-34982613 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 830 1 75 3 0 17 144 LIG3,CCT6B,ZNF830
SE_02_099300617 chr17:34979810-34993336 Sample_02_0993 Blood MOLM-13_empty 617 6 347 16 2 106 673 LIG3,CCT6B,ZNF830
SE_02_082200537 chr17:34979815-34982710 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 537 1 76 3 0 19 144 LIG3,CCT6B,ZNF830
SE_02_103400704 chr17:34979852-34993858 Sample_02_1034 Blood AML cell 704 2 358 16 2 107 673 LIG3,CCT6B,ZNF830
SE_01_006800190 chr17:34979919-34998355 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 190 3 468 20 5 146 1016 LIG3,ZNF830,CCT6B
SE_02_082000434 chr17:34979933-34982722 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 434 1 73 3 0 18 144 LIG3,CCT6B,ZNF830
SE_02_034600166 chr17:34980189-34993554 Sample_02_0346 Blood AML10 166 2 339 16 2 105 673 LIG3,ZNF830,CCT6B
SE_02_010400503 chr17:34988459-35032839 Sample_02_0104 Blood neutrophils 503 8 1175 53 5 197 2309 RFFL,LIG3,ZNF830,CCT6B
SE_02_120400626 chr17:34994232-35029339 Sample_02_1204 Brain NB2 626 15 917 43 5 146 1921 RFFL,RAD51L3-RFFL,LIG3,CCT6B,ZNF830
SE_01_008700212 chr17:34995734-35033321 Sample_01_0087 Thyroid gland thyroid-gland 212 6 974 44 4 136 1865 RFFL,LIG3,ZNF830,CCT6B
SE_01_010500135 chr17:34996624-35032859 Sample_01_0105 Thyroid gland thyroid gland_54y 135 11 946 44 4 118 1746 RFFL,RAD51L3-RFFL,LIG3,CCT6B,ZNF830
SE_02_121100482 chr17:34997455-35029043 Sample_02_1211 Brain GBM21 482 10 832 40 3 115 1715 RFFL,RAD51L3-RFFL,LIG3,CCT6B,ZNF830
SE_02_100000264 chr17:34998458-35028971 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 264 7 805 39 2 107 1574 RFFL,RAD51L3-RFFL,LIG3,CCT6B,ZNF830,NLE1
SE_02_101300306 chr17:34998574-35044461 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 306 14 1168 52 3 119 1550 RFFL,RAD51L3-RFFL,LIG3,CCT6B,ZNF830

Genomic distribution of SEs associated with LIG3

The strength of the tissue affected by the gene


Expression of LIG3