Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000205213 |
| Gene: | LGR4 | Gene type: | protein_coding |
| Strand: | - | External links: |
|
| Genomic region: | chr11:27365961-27472790 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_014400678 | chr11:27408141-27430433 |
Sample_02_0144 | Peripheral blood | MV411_DMSO | 678 | 2 | 538 | 31 | 3 | 165 | 22 | LGR4,CCDC34 |
| SE_02_003900567 | chr11:27415978-27483662 |
Sample_02_0039 | Embryo | AFG | 567 | 10 | 1549 | 80 | 10 | 368 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_006500088 | chr11:27419602-27472023 |
Sample_02_0065 | Embryo | KO2-Late_G1 | 88 | 7 | 1208 | 61 | 9 | 299 | 31 | LGR4,BDNF-AS1,LIN7C |
| SE_02_003600358 | chr11:27420154-27473556 |
Sample_02_0036 | Embryo | H7 | 358 | 15 | 1243 | 65 | 9 | 337 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_027600179 | chr11:27420509-27445660 |
Sample_02_0276 | Retina | FW15 | 179 | 4 | 601 | 38 | 6 | 181 | 0 | LGR4 |
| SE_01_002100696 | chr11:27420573-27446003 |
Sample_01_0021 | Skin | bipolar-neuron | 696 | 3 | 609 | 38 | 6 | 182 | 0 | LGR4 |
| SE_02_006400370 | chr11:27420783-27446107 |
Sample_02_0064 | Embryo | DN-Early_G1 | 370 | 4 | 607 | 38 | 6 | 182 | 0 | LGR4 |
| SE_02_001800019 | chr11:27420835-27473012 |
Sample_02_0018 | Embryo | NEC | 19 | 9 | 1210 | 63 | 9 | 334 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_006700630 | chr11:27426453-27446392 |
Sample_02_0067 | Embryo | AzH-G2/M | 630 | 3 | 482 | 33 | 5 | 127 | 0 | LGR4 |
| SE_02_012500159 | chr11:27439950-27473948 |
Sample_02_0125 | Embryo | Embryonic-stem-cells_Primed | 159 | 4 | 766 | 36 | 6 | 236 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_01_005100099 | chr11:27442272-27466910 |
Sample_01_0051 | Embryo | neural-progenitor-cell | 99 | 3 | 550 | 26 | 5 | 166 | 0 | LGR4,BDNF-AS1,LIN7C |
| SE_02_003300897 | chr11:27442936-27508069 |
Sample_02_0033 | Pancreas | pancreatic-islets-F | 897 | 10 | 1532 | 87 | 12 | 298 | 807 | BDNF-AS1,LIN7C,LGR4 |
| SE_02_039700350 | chr11:27444960-27485960 |
Sample_02_0397 | Mammary gland | CAL51-MCF-7 | 350 | 9 | 926 | 42 | 6 | 181 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_01_004500139 | chr11:27447019-27472924 |
Sample_01_0045 | Mammary gland | mammary-epithelial-cell | 139 | 4 | 583 | 24 | 3 | 150 | 269 | LGR4,BDNF-AS1,LIN7C |
| SE_02_011100893 | chr11:27447026-27473202 |
Sample_02_0111 | Ovaries | IOE4 | 893 | 5 | 590 | 25 | 3 | 153 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_029400942 | chr11:27447040-27472961 |
Sample_02_0294 | Pancreatic | L3-6_DMSO | 942 | 4 | 585 | 24 | 3 | 151 | 280 | LGR4,BDNF-AS1,LIN7C |
| SE_02_006300481 | chr11:27447073-27473850 |
Sample_02_0063 | Skin | Keratinocytes | 481 | 5 | 601 | 24 | 3 | 157 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_008400150 | chr11:27447160-27473984 |
Sample_02_0084 | Oral cavity | KB_5Z-7-oxozeaenol | 150 | 6 | 600 | 24 | 3 | 157 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_005700430 | chr11:27447167-27472903 |
Sample_02_0057 | Mammary gland | vHMEC | 430 | 5 | 574 | 23 | 3 | 148 | 267 | LGR4,BDNF-AS1,LIN7C |
| SE_02_008500203 | chr11:27447187-27473911 |
Sample_02_0085 | Oral cavity | KB_IL-1alpha_5Z-7-oxozeaenol | 203 | 5 | 599 | 24 | 3 | 157 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_01_004100230 | chr11:27447444-27472920 |
Sample_01_0041 | Skin | keratinocyte | 230 | 4 | 570 | 23 | 3 | 150 | 268 | LGR4,BDNF-AS1,LIN7C |
| SE_02_032700959 | chr11:27450616-27472078 |
Sample_02_0327 | Liver | hepatocytes_d6 | 959 | 4 | 473 | 16 | 3 | 113 | 50 | LGR4,BDNF-AS1,LIN7C |
| SE_01_000600326 | chr11:27450711-27487092 |
Sample_01_0006 | Lung | A549_ethanol_1h | 326 | 4 | 807 | 36 | 5 | 172 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_032501059 | chr11:27450812-27472990 |
Sample_02_0325 | Liver | hepatocytes_d1 | 1059 | 4 | 487 | 19 | 3 | 151 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_009500353 | chr11:27451032-27473932 |
Sample_02_0095 | Mammary gland | MDA-MB-468 | 353 | 3 | 506 | 20 | 3 | 156 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_00_000301331 | chr11:27451176-27473820 |
Sample_00_0003 | Adrenal gland | adrenal-gland_97d | 1331 | 7 | 499 | 19 | 3 | 153 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_001000797 | chr11:27451183-27472019 |
Sample_02_0010 | Kidney | A-498_emptyvector | 797 | 7 | 455 | 14 | 3 | 110 | 28 | LGR4,BDNF-AS1,LIN7C |
| SE_03_001300659 | chr11:27453270-27486636 |
Sample_03_0013 | Lung | A549 | 659 | 2 | 719 | 31 | 4 | 138 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_008300166 | chr11:27453479-27473928 |
Sample_02_0083 | Oral cavity | KB_untreat | 166 | 3 | 434 | 15 | 2 | 122 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_032600822 | chr11:27453830-27497748 |
Sample_02_0326 | Liver | hepatocytes_d3 | 822 | 6 | 1007 | 57 | 6 | 159 | 512 | LGR4,LIN7C,BDNF-AS1 |
| SE_02_029500277 | chr11:27454371-27473537 |
Sample_02_0295 | Lung | A549_TGFBeta_72h | 277 | 6 | 413 | 15 | 2 | 120 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_03_001400543 | chr11:27454473-27474010 |
Sample_03_0014 | Lung | A549_dexamethasone_2h | 543 | 2 | 422 | 15 | 2 | 122 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_01_001200283 | chr11:27454563-27474075 |
Sample_01_0012 | Lung | A549_dexamethasone_1h | 283 | 3 | 421 | 15 | 2 | 122 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_00_002301043 | chr11:27454804-27473630 |
Sample_00_0023 | Embryo | mesenchymal-stem-cell | 1043 | 6 | 406 | 15 | 2 | 120 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_027000643 | chr11:27454933-27469902 |
Sample_02_0270 | Kidney | PCS-400 | 643 | 7 | 329 | 10 | 2 | 67 | 0 | LGR4,BDNF-AS1,LIN7C |
| SE_02_042900504 | chr11:27454933-27471447 |
Sample_02_0429 | Kidney | 12364284_VHL+ | 504 | 8 | 351 | 10 | 2 | 73 | 0 | LGR4,BDNF-AS1,LIN7C |
| SE_02_042800580 | chr11:27454937-27472029 |
Sample_02_0428 | Kidney | 12364284_VHL- | 580 | 6 | 367 | 11 | 2 | 78 | 37 | LGR4,BDNF-AS1,LIN7C |
| SE_02_043000553 | chr11:27455240-27471654 |
Sample_02_0430 | Kidney | 12364284 | 553 | 8 | 348 | 10 | 2 | 76 | 0 | LGR4,BDNF-AS1,LIN7C |
| SE_02_041500172 | chr11:27455414-27471480 |
Sample_02_0415 | Stomach | YCC22 | 172 | 7 | 337 | 9 | 2 | 73 | 0 | LGR4,BDNF-AS1,LIN7C |
| SE_02_003000185 | chr11:27455496-27470964 |
Sample_02_0030 | Kidney | human kidney proximal tubule cells | 185 | 7 | 330 | 9 | 2 | 73 | 0 | LGR4,BDNF-AS1,LIN7C |
| SE_01_007100279 | chr11:27459555-27473834 |
Sample_01_0071 | Pancreas | body-of-pancreas | 279 | 3 | 310 | 10 | 1 | 98 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_027600406 | chr11:27459579-27473267 |
Sample_02_0276 | Retina | FW15 | 406 | 2 | 296 | 10 | 1 | 95 | 285 | LGR4,BDNF-AS1,LIN7C |
| SE_02_108300709 | chr11:27459735-27502198 |
Sample_02_1083 | Macula | macula | 709 | 10 | 1001 | 59 | 7 | 157 | 681 | LOC105376671,LIN7C,LGR4,BDNF-AS,MIR8087 |
| SE_02_108200924 | chr11:27459856-27493037 |
Sample_02_1082 | Retina | retina | 924 | 12 | 769 | 38 | 4 | 114 | 285 | LOC105376671,LGR4,BDNF-AS,MIR8087,LIN7C |
| SE_00_003000242 | chr11:27460570-27472733 |
Sample_00_0030 | Pancreas | pancreas | 242 | 5 | 255 | 8 | 1 | 74 | 230 | LGR4,BDNF-AS1,LIN7C |
| SE_02_019200028 | chr11:27467229-27472863 |
Sample_02_0192 | Stomach | MKN45 | 28 | 1 | 126 | 5 | 0 | 53 | 255 | LGR4,BDNF-AS1,LIN7C |
Genomic distribution of SEs associated with LGR4