SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000168675
Gene: LDLRAD4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr18:13217498-13652755 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104603301 chr18:13127002-13144547 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3301 10 674 66 0 0 0 LDLRAD4
SE_02_104801877 chr18:13129349-13140204 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1877 8 444 43 0 0 0 LDLRAD4
SE_02_068600182 chr18:13136477-13166559 Sample_02_0686 Lung NCI-H128_no infection 182 5 869 74 1 0 0 LDLRAD4
SE_02_155301092 chr18:13211560-13237724 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1092 7 762 34 0 0 229 LDLRAD4
SE_02_055300242 chr18:13211771-13241538 Sample_02_0553 Other HSSY2 shCt 242 11 900 41 0 0 229 LDLRAD4
SE_02_088901502 chr18:13216040-13232887 Sample_02_0889 Heart left ventricle_LV1183 1502 5 461 19 0 0 218 LDLRAD4
SE_02_119700831 chr18:13216058-13240415 Sample_02_1197 Brain GBM33 831 14 707 33 0 0 218 LDLRAD4
SE_02_108200705 chr18:13216142-13261114 Sample_02_1082 Retina retina 705 14 1337 80 5 0 208 LDLRAD4
SE_02_090300936 chr18:13216214-13235963 Sample_02_0903 Heart left ventricle_DCM_LV1009 936 4 562 28 0 0 190 LDLRAD4
SE_02_108300763 chr18:13216306-13241788 Sample_02_1083 Macula macula 763 7 765 36 0 0 181 LDLRAD4
SE_02_091301324 chr18:13216317-13236689 Sample_02_0913 Heart left ventricle_DCM_LV1304 1324 5 571 29 0 0 181 LDLRAD4
SE_02_089201326 chr18:13216340-13232996 Sample_02_0892 Heart left ventricle_LV1215 1326 5 455 18 0 0 178 LDLRAD4
SE_02_092200819 chr18:13216375-13232478 Sample_02_0922 Heart fetal heart_PCW10_12434 819 4 424 17 0 0 175 LDLRAD4
SE_02_092400628 chr18:13216384-13232682 Sample_02_0924 Heart fetal heart_PCW10_12569 628 3 437 18 0 0 175 LDLRAD4
SE_02_090201181 chr18:13216394-13233009 Sample_02_0902 Heart left ventricle_LV1558 1181 4 452 18 0 0 175 LDLRAD4
SE_02_097900720 chr18:13216412-13240071 Sample_02_0979 Brain JN14-BS1_H3.3K27M 720 8 682 31 0 0 172 LDLRAD4
SE_02_096600460 chr18:13216423-13240064 Sample_02_0966 Brain H3.3K27M_JN29-BS3 460 8 682 31 0 0 172 LDLRAD4
SE_02_119900782 chr18:13216434-13237266 Sample_02_1199 Brain GBM35 782 8 585 28 0 0 172 LDLRAD4
SE_02_119601055 chr18:13216464-13270123 Sample_02_1196 Brain GBM32 1055 17 1568 84 5 0 170 LDLRAD4
SE_02_092500567 chr18:13216539-13232943 Sample_02_0925 Heart fetal heart_PCW17_12570 567 4 448 18 0 0 162 LDLRAD4
SE_02_090601009 chr18:13216557-13236552 Sample_02_0906 Heart left ventricle_DCM_LV1072 1009 4 562 28 0 0 161 LDLRAD4
SE_02_118700969 chr18:13216574-13240267 Sample_02_1187 Brain GBM16 969 8 683 31 0 0 161 LDLRAD4
SE_01_009801007 chr18:13216737-13232938 Sample_01_0098 Heart left ventricle_51y 1007 4 443 18 0 0 161 LDLRAD4
SE_02_117400954 chr18:13216756-13236718 Sample_02_1174 Brain GBM02 954 7 560 28 0 0 161 LDLRAD4
SE_02_092301064 chr18:13218009-13232822 Sample_02_0923 Heart fetal heart_PCW10_12522 1064 2 416 17 0 0 161 LDLRAD4
SE_02_104600156 chr18:13220671-13421624 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 156 68 5957 205 55 160 483 LDLRAD4-AS1,LDLRAD4,MIR5190
SE_02_104700321 chr18:13222453-13328134 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 321 40 3187 159 34 54 46 LDLRAD4
SE_02_104901540 chr18:13239713-13300507 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1540 21 1793 95 9 39 46 LDLRAD4
SE_02_092101063 chr18:13252321-13285696 Sample_02_0921 Heart embryonic heart_CS22 1063 17 1012 61 4 32 46 LDLRAD4
SE_02_092200717 chr18:13252867-13302503 Sample_02_0922 Heart fetal heart_PCW10_12434 717 14 1456 74 8 51 46 LDLRAD4
SE_02_092300728 chr18:13252922-13302772 Sample_02_0923 Heart fetal heart_PCW10_12522 728 16 1460 76 9 51 46 LDLRAD4
SE_02_104800599 chr18:13255088-13300445 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 599 20 1314 63 7 39 46 LDLRAD4
SE_02_125200359 chr18:13259128-13313735 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 359 20 1591 67 18 53 46 LDLRAD4
SE_02_074800522 chr18:13259217-13272446 Sample_02_0748 Mammary gland HCC1599_WO 522 4 369 16 3 0 0 LDLRAD4
SE_02_055200395 chr18:13259330-13274069 Sample_02_0552 Other SYO1 shCt 395 9 412 18 3 0 0 LDLRAD4
SE_02_125100469 chr18:13259745-13313850 Sample_02_1251 Bone marrow RS4_11_AZD1775 _10h 469 20 1577 66 18 53 46 LDLRAD4
SE_02_124900479 chr18:13259765-13313454 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 479 17 1552 65 17 53 46 LDLRAD4
SE_02_074900518 chr18:13259767-13272316 Sample_02_0749 Mammary gland HCC1599_GSI 518 3 346 15 3 0 0 LDLRAD4
SE_02_091301322 chr18:13260050-13319906 Sample_02_0913 Heart left ventricle_DCM_LV1304 1322 20 1750 73 22 54 46 LDLRAD4
SE_02_090801470 chr18:13260153-13320481 Sample_02_0908 Heart left ventricle_DCM_LV1262 1470 16 1765 73 23 54 46 LDLRAD4
SE_02_104000130 chr18:13261829-13298120 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 130 20 1042 42 3 39 46 LDLRAD4
SE_02_104100060 chr18:13265652-13297557 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 60 14 927 40 3 39 46 LDLRAD4
SE_02_104200480 chr18:13265739-13291665 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 480 7 769 37 3 39 46 LDLRAD4
SE_02_059200180 chr18:13266209-13290274 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 180 9 729 37 3 34 46 LDLRAD4
SE_02_103900327 chr18:13272186-13325661 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 327 8 1599 74 25 54 46 LDLRAD4
SE_02_109700117 chr18:13284504-13338786 Sample_02_1097 Haematopoietic and lymphoid tissue 697 117 20 1596 66 34 32 0 LDLRAD4
SE_02_043900179 chr18:13288533-13302920 Sample_02_0439 Bone Hu09 179 5 392 17 5 19 0 LDLRAD4
SE_02_057300202 chr18:13295256-13314823 Sample_02_0573 Blood Nalm6_1 202 9 571 21 14 15 0 LDLRAD4
SE_02_073900294 chr18:13295892-13314977 Sample_02_0739 Blood Nalm6 294 2 556 21 14 15 0 LDLRAD4
SE_02_088500416 chr18:13296569-13314846 Sample_02_0885 Blood NALM6_2 416 7 540 21 14 15 0 LDLRAD4
SE_02_082200686 chr18:13306211-13315489 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 686 3 273 11 11 3 0 LDLRAD4
SE_02_082000637 chr18:13307484-13314507 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 637 2 223 10 11 3 0 LDLRAD4
SE_02_075100717 chr18:13600360-13630298 Sample_02_0751 Lymphoma Rec-1_WO 717 12 807 13 2 57 439 LDLRAD4,MIR4526
SE_02_099800328 chr18:13600991-13630239 Sample_02_0998 Lymphoma OCI-LY1_DMSO 328 13 791 12 2 57 439 LDLRAD4,MIR4526
SE_02_055300200 chr18:13603246-13630275 Sample_02_0553 Other HSSY2 shCt 200 15 742 12 2 57 439 LDLRAD4,MIR4526
SE_02_117300144 chr18:13604815-13654521 Sample_02_1173 Brain GBM01 144 19 1359 32 4 122 1702 LDLRAD4,MIR4526
SE_02_104901272 chr18:13604848-13635987 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1272 19 845 11 2 59 439 LDLRAD4,MIR4526
SE_02_121600058 chr18:13605285-13630256 Sample_02_1216 Blood Jurkat ZBTB1 KO 58 6 685 9 2 57 439 LDLRAD4,MIR4526
SE_02_075001122 chr18:13605404-13630102 Sample_02_0750 Lymphoma Rec-1_GSI 1122 9 677 9 2 57 439 LDLRAD4,MIR4526
SE_02_088500300 chr18:13605434-13630351 Sample_02_0885 Blood NALM6_2 300 4 680 9 2 57 439 LDLRAD4,MIR4526
SE_02_121500069 chr18:13605507-13629498 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 69 5 665 9 2 56 439 LDLRAD4,MIR4526
SE_02_121700079 chr18:13605549-13630200 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 79 8 677 9 2 57 439 LDLRAD4,MIR4526
SE_02_121400073 chr18:13606820-13629154 Sample_02_1214 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1 73 5 622 6 2 51 439 LDLRAD4,MIR4526
SE_02_119600287 chr18:13606821-13639736 Sample_02_1196 Brain GBM32 287 13 886 10 3 54 439 LDLRAD4,MIR4526
SE_02_125200185 chr18:13606952-13630267 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 185 12 637 6 2 51 439 LDLRAD4,MIR4526
SE_02_078400595 chr18:13607223-13630304 Sample_02_0784 Blood OSU-CLL 595 4 630 6 2 51 439 LDLRAD4,MIR4526
SE_02_045700440 chr18:13607723-13617015 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 440 2 270 3 0 38 298 LDLRAD4,MIR4526
SE_02_045500752 chr18:13607804-13616833 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 752 2 260 3 0 38 298 LDLRAD4,MIR4526
SE_02_124900185 chr18:13607931-13630247 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 185 13 618 6 2 51 439 LDLRAD4,MIR4526
SE_02_099900404 chr18:13607940-13630072 Sample_02_0999 Lymphoma OCI-LY1_966 404 9 615 6 2 51 439 LDLRAD4,MIR4526
SE_02_073600079 chr18:13608223-13630323 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 79 5 613 6 2 51 439 LDLRAD4,MIR4526
SE_02_104700859 chr18:13608230-13659800 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 859 18 1410 45 4 117 1702 LDLRAD4,MIR4526
SE_02_125000198 chr18:13608325-13630269 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 198 15 610 6 2 51 439 LDLRAD4,MIR4526
SE_02_106900210 chr18:13608435-13630248 Sample_02_1069 Bone marrow Bone marrow aspirate 210 7 604 6 2 51 439 LDLRAD4,MIR4526
SE_02_121300166 chr18:13608444-13654795 Sample_02_1213 Brain GBM31 166 13 1266 28 4 116 1702 LDLRAD4,MIR4526
SE_02_057300361 chr18:13608502-13630293 Sample_02_0573 Blood Nalm6_1 361 7 602 6 2 51 439 LDLRAD4,MIR4526
SE_02_125100184 chr18:13608509-13630783 Sample_02_1251 Bone marrow RS4_11_AZD1775 _10h 184 15 614 6 2 51 439 LDLRAD4,MIR4526
SE_02_073900457 chr18:13608917-13630320 Sample_02_0739 Blood Nalm6 457 7 586 6 2 51 439 LDLRAD4,MIR4526
SE_02_120400222 chr18:13609344-13639884 Sample_02_1204 Brain NB2 222 7 817 9 3 52 439 LDLRAD4,MIR4526
SE_02_120500203 chr18:13610301-13654862 Sample_02_1205 Brain NB3 203 8 1212 27 4 113 1702 LDLRAD4,MIR4526
SE_02_120300250 chr18:13610341-13654781 Sample_02_1203 Brain NB1 250 10 1211 27 4 113 1702 LDLRAD4,MIR4526
SE_02_121100274 chr18:13610372-13639668 Sample_02_1211 Brain GBM21 274 14 791 9 3 50 439 LDLRAD4,MIR4526
SE_02_149400582 chr18:13610450-13624050 Sample_02_1494 Other monocyte-derived dendritic cells_0h 582 4 392 2 1 42 439 LDLRAD4,MIR4526
SE_02_134600263 chr18:13611046-13630089 Sample_02_1346 Leukophereses leukophereses_p400 263 2 520 5 2 48 425 LDLRAD4,MIR4526
SE_02_107100369 chr18:13613335-13628252 Sample_02_1071 Blood Jurkat_WT 369 8 407 2 2 25 141 LDLRAD4,MIR4526
SE_02_107000344 chr18:13613473-13628067 Sample_02_1070 Blood SupT1_WT 344 8 398 2 2 24 141 LDLRAD4,MIR4526
SE_02_119800413 chr18:13613559-13639732 Sample_02_1198 Brain GBM34 413 14 686 7 3 27 141 LDLRAD4,MIR4526
SE_02_101300189 chr18:13613647-13650015 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 189 24 983 16 4 74 1193 LDLRAD4,MIR4526
SE_02_100900167 chr18:13613723-13639454 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 167 19 675 7 3 27 141 LDLRAD4,MIR4526
SE_02_100700102 chr18:13614118-13639648 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 102 9 664 7 3 26 141 LDLRAD4,MIR4526
SE_02_101400088 chr18:13614858-13630070 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 88 9 402 3 2 21 141 LDLRAD4,MIR4526
SE_02_100600214 chr18:13614917-13628212 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 214 4 360 2 2 18 141 LDLRAD4,MIR4526
SE_02_100000183 chr18:13614995-13635921 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 183 11 549 4 2 22 141 LDLRAD4,MIR4526
SE_02_100800175 chr18:13615008-13639544 Sample_02_1008 Brain Lateral temporal lobe_1T_AD 175 14 643 7 3 22 141 LDLRAD4,MIR4526
SE_02_101000142 chr18:13616474-13622504 Sample_02_1010 Brain Lateral temporal lobe_3T_AD 142 2 179 0 0 7 141 LDLRAD4,MIR4526
SE_02_100500200 chr18:13616528-13627884 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 200 6 321 2 2 10 141 LDLRAD4,MIR4526
SE_02_100100056 chr18:13618865-13628396 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 56 3 269 2 2 11 141 LDLRAD4,MIR4526
SE_02_101100208 chr18:13619094-13628390 Sample_02_1011 Brain Lateral temporal lobe_5T_AD 208 4 263 2 2 11 141 LDLRAD4,MIR4526
SE_02_091301325 chr18:13658113-13689152 Sample_02_0913 Heart left ventricle_DCM_LV1304 1325 11 828 84 0 26 462 FAM210A,LDLRAD4,RNMT,MIR4526
SE_01_009500166 chr18:13660049-13677121 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 166 2 397 43 0 21 326 FAM210A,LDLRAD4,RNMT,MIR4526
SE_02_090701390 chr18:13660681-13689314 Sample_02_0907 Heart left ventricle_DCM_LV1223 1390 10 757 77 0 26 462 FAM210A,LDLRAD4,RNMT,MIR4526
SE_02_131900384 chr18:13662816-13684491 Sample_02_1319 Connective Tissue HT1080_DDIT3 384 12 574 59 0 19 398 FAM210A,LDLRAD4,RNMT
SE_02_143201715 chr18:13672418-13677512 Sample_02_1432 Bone A673 STAG2 WT 1715 1 120 20 0 3 0 FAM210A,LDLRAD4,RNMT
SE_02_064601081 chr18:13672634-13676871 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1081 2 79 15 0 3 0 FAM210A,LDLRAD4,RNMT
Genomic distribution of SEs associated with LDLRAD4
Genome Browser

The strength of the tissue affected by the gene

Expression of LDLRAD4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)