SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000272767
Gene: JMJD1C-AS1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr10:63465229-63466563 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_133100170 chr10:63404391-63435794 Sample_02_1331 Blood Molm13_CTRL 170 7 838 73 5 19 0 JMJD1C,JMJD1C-AS1,MIR1296
SE_02_101701687 chr10:63406561-63442301 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1687 13 935 77 5 21 0 JMJD1C,JMJD1C-AS1,MIR1296
SE_02_109800398 chr10:63407090-63434818 Sample_02_1098 Blood THP1_DMSO_noPMA 398 20 739 64 5 19 0 JMJD1C,JMJD1C-AS1,MIR1296
SE_02_054800321 chr10:63409110-63435437 Sample_02_0548 Blood THP-1_24h with EtOH 321 3 698 62 5 19 0 JMJD1C,JMJD1C-AS1,MIR1296
SE_02_137801351 chr10:63409649-63437934 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 1351 16 751 65 5 19 0 JMJD1C,JMJD1C-AS1,MIR1296
SE_02_094800762 chr10:63428956-63440303 Sample_02_0948 Pharyng Detroit562 762 4 288 23 2 0 0 JMJD1C,JMJD1C-AS1
SE_02_057700121 chr10:63454237-63471863 Sample_02_0577 Blood MOLM13_empty 121 1 435 32 2 14 327 JMJD1C,JMJD1C-AS1,REEP3
SE_02_058200116 chr10:63455180-63471527 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 116 1 406 28 1 14 327 JMJD1C,JMJD1C-AS1,REEP3
SE_02_099400157 chr10:63455274-63471367 Sample_02_0994 Blood MOLM13_SIK3TQ 157 1 398 28 1 14 327 JMJD1C,JMJD1C-AS1,REEP3
SE_02_054800262 chr10:63456076-63472057 Sample_02_0548 Blood THP-1_24h with EtOH 262 1 397 27 1 14 327 JMJD1C,JMJD1C-AS1,REEP3
SE_02_058100141 chr10:63456100-63471563 Sample_02_0581 Blood MOLM13_empty_HG 141 1 385 27 1 14 327 JMJD1C,JMJD1C-AS1,REEP3
SE_02_133200295 chr10:63456292-63469717 Sample_02_1332 Blood Monomac6_CTRL 295 1 350 26 0 13 327 JMJD1C,JMJD1C-AS1
SE_02_057500166 chr10:63456369-63471470 Sample_02_0575 Blood MOLM13_sgLKB1e2 166 1 379 27 1 14 327 JMJD1C,JMJD1C-AS1,REEP3
SE_02_134100210 chr10:63456497-63472171 Sample_02_1341 Blood MV411 210 1 391 26 1 14 327 JMJD1C,JMJD1C-AS1,REEP3
SE_02_155700340 chr10:63457698-63468321 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 340 2 296 25 0 13 327 JMJD1C,JMJD1C-AS1
SE_02_046100268 chr10:63458218-63471427 Sample_02_0461 Blood MV-4-11-B cells 268 6 341 25 1 14 327 JMJD1C,JMJD1C-AS1,REEP3
SE_02_134700211 chr10:63458804-63469302 Sample_02_1347 Leukophereses leukophereses_p401 211 3 285 21 0 13 327 JMJD1C,JMJD1C-AS1
SE_02_134400054 chr10:63460728-63469740 Sample_02_1344 Leukophereses leukophereses_p217 54 1 240 14 0 13 327 JMJD1C,JMJD1C-AS1
SE_02_099300257 chr10:63460941-63469881 Sample_02_0993 Blood MOLM-13_empty 257 1 236 14 0 13 327 JMJD1C,JMJD1C-AS1
Genomic distribution of SEs associated with JMJD1C-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of JMJD1C-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)