SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000137825
Gene: ITPKA Gene type: protein_coding
Strand: + External links:
Genomic region: chr15:41493393-41503551 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104900554 chr15:41413397-41511698 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 554 28 2724 214 7 427 3347 ITPKA,LTK,RTF1,RPAP1,NDUFAF1,TYRO3
SE_02_104701887 chr15:41450269-41504524 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1887 13 1444 109 5 298 2163 ITPKA,LTK,RTF1,NDUFAF1,RPAP1
SE_02_045100808 chr15:41465090-41491395 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 808 8 728 48 1 123 1006 RTF1,ITPKA,LTK
SE_02_001100714 chr15:41466862-41492250 Sample_02_0011 Kidney A-498_wtVHL 714 7 706 48 2 115 957 RTF1,ITPKA,LTK
SE_02_158000828 chr15:41467097-41496554 Sample_02_1580 Renal 786-O 828 15 802 53 2 196 1238 ITPKA,RTF1,LTK,RPAP1
SE_02_035400497 chr15:41473701-41497373 Sample_02_0354 Colon Colo205 497 3 594 41 2 185 1119 ITPKA,RTF1,RPAP1,LTK
SE_02_103300497 chr15:41473782-41496772 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 497 6 581 38 2 177 1119 ITPKA,RTF1,RPAP1,LTK,TYRO3,NDUFAF1
SE_01_007901010 chr15:41473989-41513291 Sample_01_0079 Peyers patch Peyers-patch 1010 5 1055 91 6 325 3198 ITPKA,LTK,RTF1,RPAP1,TYRO3
SE_00_004900296 chr15:41474320-41513156 Sample_00_0049 Small intestine small intestine 30y 296 7 1047 91 6 324 3172 ITPKA,LTK,RTF1,TYRO3,RPAP1,MGA,NDUFAF1
SE_02_061501007 chr15:41474399-41491935 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 1007 8 455 31 2 91 838 RTF1,ITPKA,LTK
SE_02_001200559 chr15:41475866-41491134 Sample_02_0012 Kidney 786-O_non-targeting 559 4 402 29 1 76 729 RTF1,ITPKA,LTK
SE_02_054500561 chr15:41475912-41496730 Sample_02_0545 Bone marrow K562 WT 561 4 535 38 2 159 1007 ITPKA,RTF1,RPAP1,LTK,TYRO3,NDUFAF1
SE_02_103502141 chr15:41477743-41512239 Sample_02_1035 Mammary gland HCC70_Vehicle 2141 5 946 86 6 283 2721 ITPKA,LTK,RTF1,TYRO3,RPAP1
SE_02_104601226 chr15:41480363-41524302 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1226 17 1241 113 7 351 3929 ITPKA,LTK,RTF1,RPAP1,TYRO3
SE_00_002001386 chr15:41481116-41497621 Sample_00_0020 Large intestine large-intestine_108d 1386 2 411 34 2 127 581 ITPKA,RTF1,RPAP1,LTK
SE_00_003601039 chr15:41481330-41497450 Sample_00_0036 Small intestine small-intestine_108days 1039 2 398 32 2 125 555 ITPKA,RTF1,RPAP1,LTK
SE_02_068200558 chr15:41490686-41506097 Sample_02_0682 Blood Kasumi-1 558 3 415 40 5 187 1389 ITPKA,LTK,RPAP1
SE_02_001500590 chr15:41492418-41497147 Sample_02_0015 Liver HepG2_shNS 590 1 106 8 0 93 281 ITPKA,RPAP1,LTK
Genomic distribution of SEs associated with ITPKA
Genome Browser

The strength of the tissue affected by the gene

Expression of ITPKA

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)