SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000170166
Gene: HOXD4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:176151550-176153226 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_011400286 chr2:176121928-176189089 Sample_02_0114 Mammary gland CAL51 286 19 1612 116 13 1050 4009 HOXD9,HOXD8,HOXD3,HOXD4,HOXD1,LOC401022,MIR10B,HOXD12,EVX2,HOXD11,HOXD10,HOXD13
SE_02_019300134 chr2:176144802-176166604 Sample_02_0193 Kidney Patient_x750N 134 1 496 28 4 491 563 MIR10B,HOXD4,HOXD3,HOXD12,HOXD11,HOXD10,HOXD9,LOC401022,HOXD1,HOXD8
SE_02_011100223 chr2:176148245-176163234 Sample_02_0111 Ovaries IOE4 223 1 338 15 2 374 510 MIR10B,HOXD4,HOXD12,HOXD11,HOXD10,HOXD9,LOC401022,HOXD3,HOXD1,HOXD8
SE_02_081800338 chr2:176150574-176164052 Sample_02_0818 Ovary High-grade serous ovarian cancer 338 1 315 16 3 345 466 HOXD4,HAGLR,HOXD1,HOXD11,HOXD8,MIR10B,HAGLROS,HOXD9,MIR7704,HOXD10,HOXD3,HOXD-AS2
SE_02_097400280 chr2:176151594-176159396 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 280 2 184 8 1 219 368 HOXD4,HAGLR,HOXD1,HOXD11,HOXD8,MIR10B,HAGLROS,HOXD9,MIR7704,HOXD10,HOXD3,HOXD-AS2
Genomic distribution of SEs associated with HOXD4
Genome Browser

The strength of the tissue affected by the gene

Expression of HOXD4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)