SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: HOXA11-AS1 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_003100452 chr7:27165497-27205935 Sample_00_0031 Placenta placenta 452 9 1142 62 11 816 3441 HOXA10,HOXA9,MIR196B,HOXA11,HOXA11-AS1,HOXA13,HOXA6,EVX1,HOXA3,HOXA5,HOXA7,HOXA4,RP1-170O19.20
SE_02_008400005 chr7:27167712-27206377 Sample_02_0084 Oral cavity KB_5Z-7-oxozeaenol 5 1 1084 58 12 766 3489 HOXA10,MIR196B,HOXA11,HOXA11-AS1,HOXA13,HOXA6,EVX1,HOXA3,HOXA5,HOXA7,HOXA9,HOXA4
SE_02_008300008 chr7:27168077-27206133 Sample_02_0083 Oral cavity KB_untreat 8 1 1055 56 11 765 3450 HOXA10,MIR196B,HOXA11,HOXA11-AS1,HOXA13,HOXA6,EVX1,HOXA3,HOXA5,HOXA7,HOXA9,HOXA4
SE_02_008200031 chr7:27168569-27206204 Sample_02_0082 Oral cavity KB_IL-1alpha 31 1 1048 55 11 762 3464 HOXA10,MIR196B,HOXA11,HOXA11-AS1,HOXA13,HOXA6,EVX1,HOXA3,HOXA5,HOXA7,HOXA9,HOXA4
SE_02_008500008 chr7:27168885-27206108 Sample_02_0085 Oral cavity KB_IL-1alpha_5Z-7-oxozeaenol 8 1 1037 54 11 761 3413 HOXA10,MIR196B,HOXA11,HOXA11-AS1,HOXA13,HOXA6,EVX1,HOXA3,HOXA5,HOXA7,HOXA9,HOXA4
SE_01_009200256 chr7:27181534-27196912 Sample_01_0092 Vagina vagina 256 1 451 27 6 328 1091 HOXA11-AS1,HOXA11,HOXA13,HOXA6,HOXA10,EVX1,HOXA5,HOXA7,HOXA9,MIR196B
SE_01_003700847 chr7:27182708-27195580 Sample_01_0037 Liver hepatocyte 847 1 377 25 6 285 873 HOXA11-AS1,HOXA11,HOXA6,HOXA10,EVX1,HOXA5,HOXA7,HOXA9,MIR196B,HOXA13
SE_02_009300540 chr7:27182821-27189802 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 540 1 198 12 3 244 857 HOXA11-AS1,HOXA11,HOXA6,HOXA10,HOXA5,HOXA7,HOXA9,MIR196B,HOXA13
SE_02_036900659 chr7:27187088-27194258 Sample_02_0369 Skeletal muscle RD 659 1 217 16 4 100 347 HOXA11-AS1,HOXA6,HOXA10,EVX1,HOXA11,HOXA5,HOXA7,HOXA9,MIR196B,HOXA13
SE_02_037900659 chr7:27187088-27194258 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 659 1 217 16 4 100 347 HOXA11-AS1,HOXA6,HOXA10,EVX1,HOXA11,HOXA5,HOXA7,HOXA9,MIR196B,HOXA13
SE_02_037500392 chr7:27187236-27194194 Sample_02_0375 Skeletal muscle RMS216 392 1 206 15 4 87 347 HOXA11-AS1,HOXA6,HOXA10,EVX1,HOXA11,HOXA5,HOXA7,HOXA9,MIR196B,HOXA13
Genomic distribution of SEs associated with HOXA11-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of HOXA11-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)