SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000257551
Gene: HLX-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr1:220832763-220880140 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_055300193 chr1:220872605-220896015 Sample_02_0553 Other HSSY2 shCt 193 10 677 59 5 177 742 HLX,HLX-AS1,LINC01352
SE_02_119900512 chr1:220873625-220894434 Sample_02_1199 Brain GBM35 512 6 618 55 5 169 742 HLX,HLX-AS1,LINC01352
SE_01_010900628 chr1:220873682-220896450 Sample_01_0109 Colon transverse colon_54y 628 10 657 60 6 179 742 HLX,HLX-AS1,LINC01352
SE_02_084100187 chr1:220875184-220929223 Sample_02_0841 Blood THP-1_untr 187 14 1492 109 7 340 742 HLX,HLX-AS1,LINC01352
SE_02_133100387 chr1:220875765-220885230 Sample_02_1331 Blood Molm13_CTRL 387 1 254 24 4 144 741 HLX,HLX-AS1,LINC01352
SE_02_133200233 chr1:220875908-220888729 Sample_02_1332 Blood Monomac6_CTRL 233 3 363 32 4 154 742 HLX,HLX-AS1,LINC01352
SE_02_135000643 chr1:220875992-220883907 Sample_02_1350 Leukophereses leukophereses_p456 643 1 194 18 3 132 518 HLX,HLX-AS1,LINC01352
SE_02_143601228 chr1:220876015-220885282 Sample_02_1436 Liver LSEC-Ctrl 1228 2 247 24 4 144 742 HLX,HLX-AS1,LINC01352
SE_02_054800117 chr1:220876029-220884205 Sample_02_0548 Blood THP-1_24h with EtOH 117 3 203 18 3 132 554 HLX,HLX-AS1,LINC01352
SE_02_057400337 chr1:220876042-220884135 Sample_02_0574 Blood MOLM-13_sgNeg2 337 1 196 18 3 132 542 HLX,HLX-AS1,LINC01352
SE_02_143801325 chr1:220876092-220884903 Sample_02_1438 Liver LSEC 1325 2 231 24 4 142 691 HLX,HLX-AS1,LINC01352
SE_02_057500481 chr1:220876109-220884236 Sample_02_0575 Blood MOLM13_sgLKB1e2 481 1 200 18 3 134 560 HLX,HLX-AS1,LINC01352
SE_02_113300706 chr1:220876157-220884533 Sample_02_1133 Liver Hepatic stellate cells 706 2 217 22 4 139 625 HLX,HLX-AS1,LINC01352
SE_02_102800489 chr1:220876203-220883365 Sample_02_1028 Blood HL-60_WT 489 3 163 17 3 130 518 HLX,HLX-AS1,LINC01352
SE_02_158600171 chr1:220876223-220884119 Sample_02_1586 Blood SupB15 ACY1035 171 4 189 18 3 132 541 HLX,HLX-AS1,LINC01352
SE_02_057800720 chr1:220876225-220884328 Sample_02_0578 Blood MOLM-13_sgSIK3e4 720 1 201 20 3 135 584 HLX,HLX-AS1,LINC01352
SE_02_046300100 chr1:220876243-220888272 Sample_02_0463 Blood OCI-AML3 cells 100 6 336 32 4 154 742 HLX,HLX-AS1,LINC01352
SE_02_137500722 chr1:220876260-220884042 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 722 5 186 18 3 131 525 HLX,HLX-AS1,LINC01352
SE_02_137400577 chr1:220876303-220883260 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 577 2 158 16 3 123 518 HLX,HLX-AS1,LINC01352
SE_02_099400963 chr1:220876316-220884105 Sample_02_0994 Blood MOLM13_SIK3TQ 963 2 187 17 3 131 537 HLX,HLX-AS1,LINC01352
SE_02_149600219 chr1:220876326-220888256 Sample_02_1496 Other monocyte-derived dendritic cells_R848_24h 219 7 334 31 4 152 742 HLX,HLX-AS1,LINC01352
SE_02_138000699 chr1:220876337-220883548 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 699 4 164 16 3 130 518 HLX,HLX-AS1,LINC01352
SE_02_099500876 chr1:220876341-220884264 Sample_02_0995 Blood MOLM-13_empty vector 876 2 194 17 3 133 566 HLX,HLX-AS1,LINC01352
SE_02_046100262 chr1:220876349-220883839 Sample_02_0461 Blood MV-4-11-B cells 262 2 177 17 3 130 518 HLX,HLX-AS1,LINC01352
SE_02_109800856 chr1:220876398-220884431 Sample_02_1098 Blood THP1_DMSO_noPMA 856 5 207 21 4 136 605 HLX,HLX-AS1,LINC01352
SE_02_137600748 chr1:220876436-220884565 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 748 3 211 21 4 138 625 HLX,HLX-AS1,LINC01352
SE_02_137700819 chr1:220876448-220884905 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 819 3 221 23 4 140 691 HLX,HLX-AS1,LINC01352
SE_02_158500239 chr1:220876588-220884147 Sample_02_1585 Blood SupB15 DMSO 239 4 181 16 3 130 544 HLX,HLX-AS1,LINC01352
SE_02_046400215 chr1:220877060-220883763 Sample_02_0464 Bone marrow MOLM-13 215 5 158 14 3 101 518 HLX,HLX-AS1,LINC01352
SE_02_139400505 chr1:220879428-220883551 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 505 2 98 8 2 66 471 HLX,HLX-AS1
SE_02_074000141 chr1:220903562-220929518 Sample_02_0740 Muscle RH3 141 7 698 40 1 167 0 HLX,HLX-AS1
SE_02_060501280 chr1:220955090-220968477 Sample_02_0605 Skin Skin Fibroblast_DMSO 1280 5 345 7 0 50 0 HLX-AS1
SE_02_084100592 chr1:220989390-221049535 Sample_02_0841 Blood THP-1_untr 592 15 1567 91 1 238 0 HLX-AS1
SE_02_087500980 chr1:221029831-221052109 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 980 5 551 31 0 68 0 HLX-AS1
SE_02_138700110 chr1:221034545-221123832 Sample_02_1387 Peripheral blood Mac-1_ALK- 110 25 2260 73 3 259 0 HLX-AS1
SE_02_073200255 chr1:221035811-221073073 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 255 8 935 38 1 39 0 HLX-AS1
SE_02_072800268 chr1:221044425-221072549 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 268 7 712 21 1 36 0 HLX-AS1
SE_02_139200103 chr1:221066001-221119951 Sample_02_1392 Peripheral blood Mac-2A_ALK- 103 11 1372 38 2 237 0 HLX-AS1
SE_02_139100173 chr1:221068900-221117949 Sample_02_1391 Peripheral blood FE-PD_ALK- 173 4 1237 32 2 211 0 HLX-AS1
SE_02_138900041 chr1:221069101-221125613 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 41 15 1439 37 2 240 0 HLX-AS1
SE_02_138800038 chr1:221072976-221119530 Sample_02_1388 Peripheral blood JB6_ALK+ 38 8 1156 31 2 208 0 HLX-AS1
SE_02_138600352 chr1:221074260-221105575 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 352 9 788 20 1 165 0 HLX-AS1
SE_02_150300501 chr1:221075940-221119320 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 501 9 1084 27 2 197 0 HLX-AS1
SE_02_149800469 chr1:221083773-221103192 Sample_02_1498 Brain SHEP-21N_DOX_2h 469 7 505 12 0 140 0 HLX-AS1
SE_02_149700399 chr1:221084289-221103150 Sample_02_1497 Brain SHEP-21N 399 6 491 12 0 140 0 HLX-AS1
SE_02_150201163 chr1:221084526-221103200 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 1163 12 488 12 0 140 0 HLX-AS1
SE_02_150100447 chr1:221084563-221103052 Sample_02_1501 Brain SHEP-21N_NOSPIKE 447 7 485 12 0 140 0 HLX-AS1
SE_02_061000586 chr1:221085303-221103338 Sample_02_0610 Liposarcoma MLS 1765-92 586 5 471 12 0 138 0 HLX-AS1
SE_02_061501133 chr1:221085347-221102929 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 1133 6 459 12 0 138 0 HLX-AS1
SE_02_126601203 chr1:221085611-221102917 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 1203 8 453 11 0 138 0 HLX-AS1
SE_02_126401539 chr1:221085827-221103171 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1539 5 455 11 0 136 0 HLX-AS1
SE_02_125901086 chr1:221087713-221102672 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 1086 8 397 11 0 131 0 HLX-AS1
SE_02_158000683 chr1:221089227-221103142 Sample_02_1580 Renal 786-O 683 7 381 9 0 129 0 HLX-AS1
SE_02_046900503 chr1:221089607-221101840 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 503 8 335 9 0 97 0 HLX-AS1
SE_02_139000059 chr1:221095695-221119172 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 59 4 601 15 2 130 0 HLX-AS1
SE_02_139400441 chr1:221096063-221118303 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 441 4 568 13 2 129 0 HLX-AS1
Genomic distribution of SEs associated with HLX-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of HLX-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)