SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000186088
Gene: GSAP Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:77310751-77416349 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_058600096 chr7:77381929-77455861 Sample_02_0586 Chordal patient-derived chordoma MGH_4 96 19 2081 208 10 127 358 LOC101927243,GSAP
SE_02_141000105 chr7:77382774-77454366 Sample_02_1410 Brain GSC6 105 16 2000 206 10 109 317 LOC101927243,GSAP
SE_02_120000236 chr7:77400223-77444592 Sample_02_1200 Brain GBM36 236 10 1201 127 8 71 237 LOC101927243,GSAP
SE_02_151400156 chr7:77403545-77428945 Sample_02_1514 Lung Differentiated AT1-like cells 156 4 669 77 7 50 237 LOC101927243,GSAP
SE_02_085700278 chr7:77404021-77456136 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 278 14 1471 143 7 81 237 LOC101927243,GSAP
SE_02_152300025 chr7:77404301-77484738 Sample_02_1523 Lung A549 DMSO 25 18 2235 198 9 143 237 LOC101927243,GSAP
SE_02_057100273 chr7:77406821-77428461 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 273 7 558 61 5 40 183 LOC101927243,GSAP
SE_02_082601323 chr7:77406914-77429039 Sample_02_0826 Stomach gastric tumor 1323 14 577 61 5 42 183 LOC101927243,GSAP
SE_02_152500254 chr7:77407286-77429291 Sample_02_1525 Stomach N87 DMSO 254 4 570 59 5 42 183 LOC101927243,GSAP
SE_02_092800383 chr7:77407539-77482786 Sample_02_0928 Peripheral blood neutrophils_Ecoli 383 18 2093 181 8 134 183 LOC101927243,GSAP
SE_02_070900423 chr7:77407709-77426652 Sample_02_0709 Pancreas hT85_organoid 423 5 484 54 4 32 183 LOC101927243,GSAP
SE_02_048100149 chr7:77407852-77466798 Sample_02_0481 Mammary gland MDA-MB231 149 28 1664 162 6 95 183 LOC101927243,GSAP
SE_02_150900350 chr7:77407957-77426707 Sample_02_1509 Lung H3122_LR 350 5 479 54 4 34 183 LOC101927243,GSAP
SE_02_143700465 chr7:77407963-77456004 Sample_02_1437 Liver LSEC-TNF 465 10 1353 126 6 71 183 LOC101927243,GSAP
SE_02_116900982 chr7:77408005-77429151 Sample_02_1169 Biliary H69_TGF beta_16h_2 982 5 556 58 5 40 183 LOC101927243,GSAP
SE_02_141800058 chr7:77408129-77464474 Sample_02_1418 Brain SF9427 58 9 1600 154 6 88 183 LOC101927243,GSAP
SE_02_127100091 chr7:77408130-77464229 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 91 17 1593 152 6 88 183 LOC101927243,GSAP
SE_02_085900382 chr7:77408197-77460224 Sample_02_0859 Prostate PC3 382 7 1474 139 6 85 183 LOC101927243,GSAP
SE_02_078400438 chr7:77408219-77429855 Sample_02_0784 Blood OSU-CLL 438 5 572 64 5 43 183 LOC101927243,GSAP
SE_02_079600029 chr7:77408286-77444733 Sample_02_0796 Brain 2229 29 10 996 102 6 58 183 LOC101927243,GSAP
SE_02_049900474 chr7:77408338-77457344 Sample_02_0499 Fetal lung IMR90 IR Senescence 474 19 1397 136 6 73 183 LOC101927243,GSAP,PTPN12
SE_02_116800838 chr7:77408360-77429139 Sample_02_1168 Biliary H69_TGF Vehicle_2 838 6 548 58 5 40 183 LOC101927243,GSAP
SE_02_116700830 chr7:77408376-77429068 Sample_02_1167 Biliary H69_TGF Vehicle_1 830 4 547 58 5 40 183 LOC101927243,GSAP
SE_02_117400245 chr7:77408376-77454098 Sample_02_1174 Brain GBM02 245 15 1281 126 6 58 183 LOC101927243,GSAP
SE_02_113800413 chr7:77408585-77464498 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 413 11 1593 154 6 88 183 LOC101927243,GSAP
SE_02_113700403 chr7:77408747-77464283 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 403 12 1587 154 6 88 183 LOC101927243,GSAP
SE_02_086701327 chr7:77408813-77457227 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1327 16 1381 134 6 71 183 LOC101927243,GSAP
SE_02_143800886 chr7:77408869-77457321 Sample_02_1438 Liver LSEC 886 16 1386 136 6 72 183 LOC101927243,GSAP
SE_02_143600810 chr7:77408886-77457337 Sample_02_1436 Liver LSEC-Ctrl 810 15 1386 136 6 72 183 LOC101927243,GSAP
SE_02_139000091 chr7:77408889-77466513 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 91 10 1633 162 6 91 183 LOC101927243,GSAP
SE_02_118600259 chr7:77408896-77453261 Sample_02_1186 Brain GBM15 259 10 1242 124 6 57 183 LOC101927243,GSAP
SE_02_119100405 chr7:77408952-77467620 Sample_02_1191 Brain GBM25 405 16 1665 163 6 98 183 LOC101927243,GSAP
SE_02_127500261 chr7:77409062-77464139 Sample_02_1275 Prostate PC3_Vorinostat 261 27 1571 152 6 87 183 LOC101927243,GSAP
SE_02_118800296 chr7:77409139-77454110 Sample_02_1188 Brain GBM18 296 7 1264 126 6 57 183 LOC101927243,GSAP
SE_02_155900556 chr7:77409816-77428884 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 556 5 506 56 4 36 183 LOC101927243,GSAP
SE_02_119700704 chr7:77409819-77455551 Sample_02_1197 Brain GBM33 704 16 1297 124 5 65 183 LOC101927243,GSAP
SE_02_118500544 chr7:77409890-77451407 Sample_02_1185 Brain GBM14 544 9 1163 119 5 54 183 LOC101927243,GSAP
SE_02_078200860 chr7:77412311-77437054 Sample_02_0782 Blood MEC1 860 3 686 79 5 37 183 LOC101927243,GSAP
SE_02_056000679 chr7:77412832-77427546 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 679 4 389 48 3 23 183 LOC101927243,GSAP
SE_02_055900904 chr7:77412835-77428478 Sample_02_0559 iPSCs FX52 iPSCs dC-T 904 4 423 50 4 25 183 LOC101927243,GSAP
SE_02_155301125 chr7:77412935-77446926 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1125 12 959 99 5 45 183 LOC101927243,GSAP
SE_02_156500386 chr7:77412980-77428658 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 386 4 425 49 4 25 183 LOC101927243,GSAP
SE_02_079500119 chr7:77413080-77429140 Sample_02_0795 Brain 1953 119 5 442 49 4 27 183 LOC101927243,GSAP
SE_02_152200368 chr7:77423328-77454092 Sample_02_1522 Skin A375 RTKi 368 7 903 83 4 38 0 LOC101927243,GSAP
SE_02_096800291 chr7:77423832-77456176 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 291 6 958 82 4 50 0 LOC101927243,GSAP
SE_02_086000657 chr7:77423973-77427671 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 657 3 98 12 2 15 0 LOC101927243,GSAP
SE_02_057200592 chr7:77424285-77443365 Sample_02_0572 Brain LN229_1_mM_glucose 592 7 539 53 4 34 0 LOC101927243,GSAP
SE_02_099100835 chr7:77424292-77463177 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 835 9 1154 104 4 67 0 LOC101927243,GSAP
SE_02_050001114 chr7:77424333-77457140 Sample_02_0500 Fetal lung IMR90_#2 1114 11 970 88 4 51 0 LOC101927243,GSAP,PTPN12
SE_02_099000345 chr7:77424399-77463289 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 345 10 1153 104 4 67 0 LOC101927243,GSAP
SE_02_084600380 chr7:77424454-77462505 Sample_02_0846 Mammary gland MDA-MB-231_untreat 380 9 1127 103 4 67 0 LOC101927243,GSAP
SE_02_153400328 chr7:77424675-77464300 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 328 6 1170 108 4 67 0 LOC101927243,GSAP
SE_02_141300565 chr7:77424968-77456210 Sample_02_1413 Muscle RH4_sgBRG1 565 7 928 81 4 50 0 LOC101927243,GSAP
SE_02_127200230 chr7:77425076-77457452 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 230 15 967 90 4 51 0 LOC101927243,GSAP
SE_02_099200579 chr7:77425121-77451158 Sample_02_0992 Mammary gland MDA-MB-231_Par 579 6 758 74 4 36 0 LOC101927243,GSAP
SE_02_074100531 chr7:77425125-77456388 Sample_02_0741 Muscle RH30 531 10 930 83 4 49 0 LOC101927243,GSAP,PTPN12
SE_00_004800556 chr7:77425227-77430924 Sample_00_0048 Embryo neuronal stem cell originated from H1 556 7 165 21 3 28 0 LOC101927243,GSAP
Genomic distribution of SEs associated with GSAP
Genome Browser

The strength of the tissue affected by the gene

Expression of GSAP

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)