SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000204175
Gene: GPRIN2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr10:46549044-46555530 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104600111 chr10:46489991-46598228 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 111 44 1757 70 3 179 2366 SYT15,GPRIN2,NPY4R
SE_02_103100025 chr10:46510108-46599913 Sample_02_1031 Head and neck SCC1 contol 25 30 1075 66 3 180 2366 SYT15,GPRIN2,NPY4R
SE_02_078000041 chr10:46510536-46550640 Sample_02_0780 Liver SMMC-7721 41 11 688 25 0 66 640 GPRIN2,NPY4R,SYT15
SE_02_103200023 chr10:46511613-46597911 Sample_02_1032 Head and neck SCC1 JQ1 23 35 994 65 3 177 2366 SYT15,GPRIN2,NPY4R
SE_02_114300002 chr10:46514485-46584147 Sample_02_1143 Peripheral nerve MPNST724_PRC2 WT 2 30 806 54 3 155 1582 SYT15,GPRIN2,NPY4R
SE_02_114600081 chr10:46514781-46551531 Sample_02_1146 Peripheral nerve STS26T PRC2 WT 81 11 517 24 0 71 703 GPRIN2,NPY4R,SYT15
SE_02_082900169 chr10:46515536-46528349 Sample_02_0829 Lung H1703 SMARCA4-infected 169 3 331 7 0 0 0 NPY4R,GPRIN2
SE_02_102500235 chr10:46515686-46528512 Sample_02_1025 Esophagus KYSE150 235 4 330 6 0 0 0 NPY4R,GPRIN2
SE_02_083000124 chr10:46515790-46540459 Sample_02_0830 Lung H1703 SMARCA2-infected 124 3 399 20 0 2 256 NPY4R,SYT15,GPRIN2
SE_04_000400024 chr10:46515844-46544749 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 24 8 433 22 0 5 256 NPY4R,SYT15,GPRIN2
SE_04_001000054 chr10:46515865-46551293 Sample_04_0010 Lung A549 TGFb 54 6 485 22 0 71 703 GPRIN2,NPY4R,SYT15
SE_04_000900019 chr10:46515913-46566082 Sample_04_0009 Lung A549 19 9 614 33 2 102 878 GPRIN2,SYT15,NPY4R
SE_02_114900045 chr10:46515940-46526891 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 45 3 315 5 0 0 0 GPRIN2
SE_02_116900518 chr10:46516032-46542429 Sample_02_1169 Biliary H69_TGF beta_16h_2 518 7 406 20 0 4 256 SYT15,GPRIN2
SE_02_114800424 chr10:46516137-46526175 Sample_02_1148 Kidney WT 9-12_control_vehicle 424 2 296 4 0 0 0 GPRIN2
SE_02_116600509 chr10:46516164-46542243 Sample_02_1166 Biliary H69_TGF beta_16h_1 509 5 396 19 0 4 256 SYT15,GPRIN2
SE_02_099100236 chr10:46516218-46526897 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 236 2 298 3 0 0 0 GPRIN2
SE_02_147200866 chr10:46516260-46541268 Sample_02_1472 Fetal lung IMR-90 866 4 382 18 0 2 256 SYT15,GPRIN2
SE_02_094600313 chr10:46516304-46526902 Sample_02_0946 Tongue HN12 313 2 294 3 0 0 0 GPRIN2
SE_02_061000110 chr10:46516317-46541510 Sample_02_0610 Liposarcoma MLS 1765-92 110 8 382 18 0 3 256 SYT15,GPRIN2
SE_04_000300020 chr10:46516332-46543005 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 20 10 394 19 0 4 256 SYT15,GPRIN2,NPY4R
SE_02_157900169 chr10:46516344-46553596 Sample_02_1579 Renal 786-M1A 169 11 479 20 0 78 703 GPRIN2,SYT15
SE_02_124000450 chr10:46516345-46525944 Sample_02_1240 Skin MCC13_virus_negative 450 2 284 3 0 0 0 GPRIN2
SE_02_116700966 chr10:46516357-46526241 Sample_02_1167 Biliary H69_TGF Vehicle_1 966 4 290 3 0 0 0 GPRIN2
SE_02_116800558 chr10:46516357-46542509 Sample_02_1168 Biliary H69_TGF Vehicle_2 558 7 391 19 0 4 256 SYT15,GPRIN2
SE_02_088200548 chr10:46516358-46526198 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 548 2 288 3 0 0 0 GPRIN2
SE_04_000700021 chr10:46516358-46545645 Sample_04_0007 Lung A549 FOXA2 shRNA2 21 7 414 20 0 9 256 SYT15,GPRIN2,NPY4R
SE_02_137600618 chr10:46516363-46541522 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 618 7 382 18 0 3 256 SYT15,GPRIN2
SE_02_113400610 chr10:46516365-46526074 Sample_02_1134 Bone U2OS-interphase 610 4 287 3 0 0 0 GPRIN2
SE_02_047400571 chr10:46516374-46540559 Sample_02_0474 Fibroblast umbilical cord Fibroblast 571 6 375 18 0 2 256 SYT15,GPRIN2
SE_02_076201494 chr10:46516376-46549505 Sample_02_0762 Podocyte podocyte_CTL 1494 4 447 20 0 38 382 GPRIN2,SYT15
SE_02_064200495 chr10:46516397-46525806 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 495 3 282 3 0 0 0 GPRIN2
SE_02_158000130 chr10:46516402-46552500 Sample_02_1580 Renal 786-O 130 17 474 20 0 74 703 GPRIN2,SYT15
SE_02_137400861 chr10:46516410-46541480 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 861 9 382 18 0 3 256 SYT15,GPRIN2
SE_02_047900985 chr10:46516418-46526886 Sample_02_0479 Head and neck SCC25 985 4 294 3 0 0 0 GPRIN2
SE_02_137500997 chr10:46516422-46540816 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 997 7 376 18 0 2 256 SYT15,GPRIN2
SE_02_064300866 chr10:46516427-46525657 Sample_02_0643 Mammary gland MDA-MB-436 866 3 274 3 0 0 0 GPRIN2
SE_02_048101746 chr10:46516502-46548746 Sample_02_0481 Mammary gland MDA-MB231 1746 6 432 20 0 23 256 SYT15,GPRIN2
SE_02_088000817 chr10:46516660-46526109 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 817 2 279 2 0 0 0 GPRIN2
SE_02_153600540 chr10:46516720-46525824 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 540 2 273 2 0 0 0 GPRIN2
SE_02_153700614 chr10:46516804-46525881 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 614 2 267 2 0 0 0 GPRIN2
SE_02_158200334 chr10:46516882-46548491 Sample_02_1582 Renal OS-RC-2 334 7 417 19 0 18 256 SYT15,GPRIN2
SE_02_088300752 chr10:46516884-46526193 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 752 2 271 2 0 0 0 GPRIN2
SE_02_088100976 chr10:46516891-46526203 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 976 2 272 2 0 0 0 GPRIN2
SE_02_087900887 chr10:46516895-46526223 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 887 2 273 2 0 0 0 GPRIN2
SE_02_087800825 chr10:46516896-46526146 Sample_02_0878 Ovary SVOG3e cells_noDox_control 825 2 271 2 0 0 0 GPRIN2,NPY4R
SE_02_111100610 chr10:46516897-46542439 Sample_02_1111 Other HGrC1_SMAD2/3KO 610 9 373 18 0 4 256 SYT15,GPRIN2
SE_02_135501162 chr10:46516903-46526083 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 1162 2 269 2 0 0 0 GPRIN2
SE_02_154000618 chr10:46516941-46526909 Sample_02_1540 Nasopharyngeal HK1 618 4 276 2 0 0 0 GPRIN2
SE_02_114000081 chr10:46516987-46523752 Sample_02_1140 Peripheral nerve MPNST007_PRC2 WT 81 3 202 2 0 0 0 GPRIN2
SE_02_144900516 chr10:46517032-46541175 Sample_02_1449 Adipose SW872_YAP_TFE3 516 4 356 17 0 2 256 SYT15,GPRIN2
SE_02_152600104 chr10:46517037-46545834 Sample_02_1526 Lung PC9 DMSO 104 5 394 19 0 9 256 SYT15,GPRIN2
SE_02_139800387 chr10:46517082-46543181 Sample_02_1398 Bone U2OS_siNC 387 9 373 18 0 4 256 SYT15,GPRIN2
SE_02_114500367 chr10:46517093-46550593 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 367 16 433 19 0 66 631 GPRIN2,SYT15
SE_02_094300118 chr10:46520402-46541396 Sample_02_0943 Brain LNZ308 118 6 275 15 0 3 256 SYT15,GPRIN2
SE_04_000600034 chr10:46520490-46545516 Sample_04_0006 Lung A549 GFP control 34 8 304 17 0 9 256 SYT15,GPRIN2,NPY4R
SE_02_116200559 chr10:46520912-46550947 Sample_02_1162 Stomach YCC11 559 8 338 17 0 69 703 GPRIN2,SYT15
SE_02_056100032 chr10:46520966-46542382 Sample_02_0561 Lung A549_1 32 8 265 16 0 4 256 SYT15,GPRIN2,NPY4R
SE_04_000800033 chr10:46521574-46544597 Sample_04_0008 Lung A549 shRNA control 33 9 261 17 0 5 256 SYT15,GPRIN2,NPY4R
SE_02_058800170 chr10:46521647-46540747 Sample_02_0588 Cervix HeLa Kyoto_untreated 170 5 230 15 0 2 256 SYT15,GPRIN2
SE_02_059000062 chr10:46521744-46540755 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 62 6 229 15 0 2 256 SYT15,GPRIN2
SE_02_058900109 chr10:46521776-46540679 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 109 5 229 15 0 2 256 SYT15,GPRIN2
SE_02_094100239 chr10:46521906-46540765 Sample_02_0941 Brain T98G 239 5 225 15 0 2 256 SYT15,GPRIN2,LINC00842
SE_02_099000325 chr10:46521915-46526616 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 325 2 140 0 0 0 0 GPRIN2
SE_04_000500068 chr10:46522192-46551216 Sample_04_0005 Lung A549 FOXA2 overexpressed 68 11 307 17 0 71 703 GPRIN2,SYT15,NPY4R
SE_02_111000334 chr10:46522246-46541320 Sample_02_1110 Other HGrC1 334 3 221 15 0 3 256 SYT15,GPRIN2
SE_02_142100057 chr10:46522409-46526253 Sample_02_1421 Brain NHA 57 1 117 0 0 0 0 GPRIN2
SE_02_135900945 chr10:46522426-46526241 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 945 2 117 0 0 0 0 GPRIN2
SE_02_056200030 chr10:46522433-46543713 Sample_02_0562 Lung A549_Dex-treated 30 10 227 16 0 5 256 SYT15,GPRIN2,NPY4R
SE_02_084600410 chr10:46522455-46549194 Sample_02_0846 Mammary gland MDA-MB-231_untreat 410 7 267 17 0 27 300 GPRIN2,SYT15
SE_02_135700584 chr10:46522523-46526154 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 584 2 108 0 0 0 0 GPRIN2
SE_02_152300073 chr10:46522540-46542409 Sample_02_1523 Lung A549 DMSO 73 5 211 16 0 4 256 SYT15,GPRIN2,NPY4R
SE_02_158100575 chr10:46522800-46549101 Sample_02_1581 Renal OS-LM1 575 6 248 17 0 25 283 GPRIN2,SYT15
SE_02_046700003 chr10:46522908-46549317 Sample_02_0467 Kidney 786-O_control 3 11 252 17 0 27 334 GPRIN2,SYT15
SE_02_151400879 chr10:46523009-46525922 Sample_02_1514 Lung Differentiated AT1-like cells 879 1 91 0 0 0 0 GPRIN2
SE_02_126500625 chr10:46523009-46541569 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 625 3 189 15 0 3 256 SYT15,GPRIN2
SE_02_126401513 chr10:46523073-46540892 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1513 4 181 15 0 2 256 SYT15,GPRIN2
SE_02_046900009 chr10:46523278-46549199 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 9 8 236 17 0 27 301 GPRIN2,SYT15
SE_02_046800051 chr10:46523427-46525322 Sample_02_0468 Kidney 786-O PBRM1 shRNA#1 51 3 57 0 0 0 0 GPRIN2
SE_02_001000264 chr10:46526512-46543596 Sample_02_0010 Kidney A-498_emptyvector 264 8 109 16 0 4 256 GPRIN2,SYT15
SE_02_026800241 chr10:46526512-46543865 Sample_02_0268 Kidney A-498 241 6 109 16 0 5 256 GPRIN2,SYT15
SE_02_029500142 chr10:46526512-46549230 Sample_02_0295 Lung A549_TGFBeta_72h 142 3 150 17 0 27 311 GPRIN2,SYT15
SE_03_001600106 chr10:46526512-46549417 Sample_03_0016 Lung A549_dexamethasone_6h 106 2 154 17 0 34 362 GPRIN2,SYT15
SE_03_001100059 chr10:46526512-46549517 Sample_03_0011 Lung A549_dexamethasone_5h 59 2 156 17 0 39 384 GPRIN2,SYT15
SE_02_026700168 chr10:46526512-46552043 Sample_02_0267 Kidney 786-O 168 7 180 17 0 71 703 GPRIN2,SYT15
SE_02_001100127 chr10:46526512-46554562 Sample_02_0011 Kidney A-498_wtVHL 127 10 193 19 1 78 723 GPRIN2,SYT15
SE_01_001200033 chr10:46526512-46598657 Sample_01_0012 Lung A549_dexamethasone_1h 33 6 530 57 3 180 2366 GPRIN2,SYT15
SE_03_000500039 chr10:46526512-46598703 Sample_03_0005 Lung A549_dexamethasone_0.5h 39 7 530 57 3 180 2366 GPRIN2,SYT15
SE_01_000600028 chr10:46526512-46598769 Sample_01_0006 Lung A549_ethanol_1h 28 7 530 57 3 180 2366 GPRIN2,SYT15
SE_03_001000026 chr10:46526512-46601572 Sample_03_0010 Lung A549_dexamethasone_1h 26 6 542 59 3 180 2366 GPRIN2,SYT15
SE_03_000400026 chr10:46526512-46601583 Sample_03_0004 Lung A549_dexamethasone_4h 26 6 542 59 3 180 2366 GPRIN2,SYT15
SE_03_001300025 chr10:46526512-46601726 Sample_03_0013 Lung A549 25 6 542 60 3 180 2366 GPRIN2,SYT15
SE_03_000700013 chr10:46526512-46601742 Sample_03_0007 Lung A549_dexamethasone_12h 13 6 542 60 3 180 2366 GPRIN2,SYT15
SE_03_001400015 chr10:46526512-46601786 Sample_03_0014 Lung A549_dexamethasone_2h 15 6 542 60 3 180 2366 GPRIN2,SYT15
SE_03_000800028 chr10:46526512-46602080 Sample_03_0008 Lung A549_dexamethasone_7h 28 4 546 60 3 180 2366 GPRIN2,SYT15,FAM35B
SE_03_000900028 chr10:46526512-46602093 Sample_03_0009 Lung A549_dexamethasone_3h 28 6 546 60 3 180 2366 GPRIN2,SYT15,FAM35B
SE_03_001500021 chr10:46526512-46602722 Sample_03_0015 Lung A549_dexamethasone_8h 21 7 547 62 3 180 2366 GPRIN2,SYT15,FAM35B
SE_02_000900093 chr10:46526914-46551694 Sample_02_0009 Kidney 786-O_wtVHL 93 7 174 17 0 71 703 GPRIN2,SYT15
SE_02_000800110 chr10:46526940-46551659 Sample_02_0008 Kidney 786-O_empty_vector 110 8 172 17 0 71 703 GPRIN2,SYT15
SE_02_032200263 chr10:46536142-46567105 Sample_02_0322 Colon Caco-2 263 3 254 16 2 102 878 GPRIN2,SYT15
SE_02_151400410 chr10:46538570-46547636 Sample_02_1514 Lung Differentiated AT1-like cells 410 4 69 2 0 16 0 SYT15,GPRIN2
SE_02_151300630 chr10:46538579-46547708 Sample_02_1513 Lung Transitional AT2->1 cells 630 4 69 2 0 16 0 SYT15,GPRIN2
SE_02_124000480 chr10:46538802-46542333 Sample_02_1240 Skin MCC13_virus_negative 480 2 25 1 0 2 0 SYT15,GPRIN2
SE_02_021500265 chr10:46551224-46560790 Sample_02_0215 Skin NHEK_siGRHL3 265 2 87 6 2 18 175 GPRIN2,SYT15
SE_02_067300613 chr10:46552110-46559661 Sample_02_0673 Prostate LNCAP_FA 613 3 70 5 2 18 175 GPRIN2,SYT15
Genomic distribution of SEs associated with GPRIN2
Genome Browser

The strength of the tissue affected by the gene

Expression of GPRIN2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)