SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000155269
Gene: GPR78 Gene type: protein_coding
Strand: + External links:
Genomic region: chr4:8558725-8619761 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_138500141 chr4:8466932-8621618 Sample_02_1385 Other iPSCs 141 36 6604 511 14 116 3815 GPR78,CPZ,TRMT44,ACOX3
SE_02_115100171 chr4:8491587-8640111 Sample_02_1151 Mammary gland MCF-7_UNTR 171 47 5769 408 14 103 2744 GPR78,CPZ
SE_02_104600122 chr4:8494897-8663225 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 122 58 6643 403 15 133 2660 GPR78,CPZ
SE_02_103100231 chr4:8499776-8561930 Sample_02_1031 Head and neck SCC1 contol 231 23 2316 242 5 0 0 GPR78,CPZ
SE_02_103200239 chr4:8499987-8561600 Sample_02_1032 Head and neck SCC1 JQ1 239 24 2294 238 5 0 0 GPR78,CPZ
SE_00_002900230 chr4:8500891-8534334 Sample_00_0029 Ovary ovary 230 9 1213 129 2 0 0 GPR78,CPZ
SE_02_037000256 chr4:8501160-8546046 Sample_02_0370 Skeletal muscle RH4 256 8 1676 193 4 0 0 GPR78,CPZ
SE_01_011500366 chr4:8501366-8545512 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 366 11 1650 192 4 0 0 GPR78,CPZ
SE_02_074100146 chr4:8501495-8548352 Sample_02_0741 Muscle RH30 146 19 1770 209 5 0 0 GPR78,CPZ
SE_02_038000404 chr4:8502346-8546126 Sample_02_0380 Skeletal muscle RH18 404 8 1641 190 3 0 0 GPR78,CPZ
SE_02_061000617 chr4:8502451-8561277 Sample_02_0610 Liposarcoma MLS 1765-92 617 12 2198 225 4 0 0 GPR78,CPZ
SE_02_114800189 chr4:8502519-8561442 Sample_02_1148 Kidney WT 9-12_control_vehicle 189 14 2202 224 4 0 0 GPR78,CPZ
SE_02_064000029 chr4:8503395-8561085 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 29 23 2161 221 4 0 0 GPR78,CPZ
SE_00_003100017 chr4:8506020-8594221 Sample_00_0031 Placenta placenta 17 10 3434 275 11 8 1264 GPR78,CPZ,ACOX3
SE_02_086700598 chr4:8506132-8561494 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 598 21 2067 209 4 0 0 GPR78,CPZ
SE_02_093000044 chr4:8506509-8583880 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 44 45 2958 258 11 0 479 GPR78,CPZ,ACOX3
SE_02_027401054 chr4:8506610-8561242 Sample_02_0274 Endometriosis hTERT_KD 1054 10 2038 204 4 0 0 GPR78,CPZ
SE_02_061500630 chr4:8506942-8558398 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 630 14 1909 197 4 0 0 GPR78,CPZ
SE_02_114900154 chr4:8514213-8561330 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 154 6 1714 166 4 0 0 GPR78,CPZ
SE_02_126701185 chr4:8514640-8545570 Sample_02_1267 Bone Im-GCT-4072_G34W 1185 6 1116 127 3 0 0 GPR78,CPZ
SE_02_092900189 chr4:8514663-8582847 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 189 35 2578 214 11 0 479 GPR78,CPZ,ACOX3
SE_02_126301505 chr4:8514734-8558415 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1505 8 1584 159 4 0 0 GPR78,CPZ,TRMT44
SE_02_044800961 chr4:8515092-8549662 Sample_02_0448 Bone MNNG 961 12 1264 146 4 0 0 GPR78,CPZ
SE_02_064200320 chr4:8515156-8559004 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 320 14 1608 158 4 0 0 GPR78,CPZ
SE_02_088201301 chr4:8515526-8558482 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 1301 8 1557 154 4 0 0 GPR78,CPZ
SE_02_064300342 chr4:8515627-8558444 Sample_02_0643 Mammary gland MDA-MB-436 342 12 1549 153 4 0 0 GPR78,CPZ
SE_02_007400296 chr4:8517315-8556976 Sample_02_0074 Other 90-8TL_PDJQ 296 6 1456 148 4 0 0 GPR78,CPZ
SE_02_114500792 chr4:8517732-8560480 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 792 9 1579 154 4 0 0 GPR78,CPZ
SE_02_143400094 chr4:8523061-8574023 Sample_02_1434 Trophoblast trophoblast stem cells 94 9 1900 164 6 0 0 GPR78,CPZ
SE_02_143500100 chr4:8524823-8573768 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 100 8 1830 155 6 0 0 GPR78,CPZ
SE_02_080800215 chr4:8525210-8557706 Sample_02_0808 Ovary RMG1_ARID1A KO 215 17 1201 127 4 0 0 GPR78,CPZ
SE_02_144000059 chr4:8525495-8572317 Sample_02_1440 Cytotrophoblast Cytotrophoblast 59 8 1740 151 6 0 0 GPR78,CPZ
SE_02_157800378 chr4:8531448-8572236 Sample_02_1578 Mammary gland MCF7_DAC+455 378 8 1544 131 6 0 0 GPR78,CPZ
SE_00_005300121 chr4:8531450-8573083 Sample_00_0053 Embryo trophoblast cell originated from H1 121 16 1587 133 6 0 0 GPR78,CPZ
SE_02_077001260 chr4:8531536-8561123 Sample_02_0770 Ovary OVCA429_shLuc 1260 17 1133 113 4 0 0 GPR78,CPZ,TRMT44
SE_02_039800345 chr4:8531598-8572701 Sample_02_0398 Mammary gland MDA-MB-231-MCF-7 345 6 1560 131 6 0 0 GPR78,CPZ
SE_02_003901068 chr4:8531630-8568951 Sample_02_0039 Embryo AFG 1068 7 1419 127 5 0 0 GPR78,CPZ
SE_02_016700472 chr4:8531765-8548223 Sample_02_0167 Mammary gland HCC1954_LCC2 472 3 663 92 4 0 0 GPR78,CPZ,C4ORF23
SE_02_136100403 chr4:8531900-8572966 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 403 12 1571 131 6 0 0 GPR78,CPZ
SE_02_136200489 chr4:8531928-8572945 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 489 13 1571 131 6 0 0 GPR78,CPZ
SE_02_136001030 chr4:8532513-8572643 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 1030 12 1533 129 6 0 0 GPR78,CPZ
SE_02_123000723 chr4:8532779-8561462 Sample_02_1230 Lung PC9 723 11 1108 109 3 0 0 GPR78,CPZ,TRMT44
SE_02_152600289 chr4:8533208-8572209 Sample_02_1526 Lung PC9 DMSO 289 11 1490 126 5 0 0 GPR78,CPZ,TRMT44
SE_01_005900428 chr4:8533290-8572823 Sample_01_0059 Lung PC-9 428 6 1518 127 5 0 0 GPR78,CPZ,C4ORF23
SE_02_123300529 chr4:8533740-8561366 Sample_02_1233 Lung PC9_miR-4497 mimic 529 10 1062 106 3 0 0 GPR78,CPZ,TRMT44
SE_02_123200572 chr4:8533987-8561310 Sample_02_1232 Lung PC9_siMED13L-2 572 9 1050 103 3 0 0 GPR78,CPZ,TRMT44
SE_02_153700579 chr4:8536284-8548232 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 579 5 486 72 2 0 0 GPR78,CPZ
SE_02_004300417 chr4:8553967-8579045 Sample_02_0043 Embryo endodermal CyT49_ES_D2 417 4 980 42 5 0 0 GPR78,CPZ
SE_02_003800902 chr4:8554253-8578443 Sample_02_0038 Embryo DE 902 4 945 42 5 0 0 GPR78,CPZ
SE_02_075500684 chr4:8554492-8570092 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 684 4 587 24 1 0 0 GPR78,CPZ
SE_00_002401068 chr4:8555996-8569112 Sample_00_0024 Embryo mesendoderm 1068 4 477 23 1 0 0 GPR78,CPZ
SE_02_075200737 chr4:8558573-8578434 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 737 6 771 38 5 0 0 GPR78,CPZ
SE_02_156700839 chr4:8566002-8569840 Sample_02_1567 iPSCs CiPSC 839 1 152 6 0 0 0 GPR78,CPZ
SE_02_157000979 chr4:8566196-8569508 Sample_02_1570 iPSCs EiPSC 979 1 132 6 0 0 0 GPR78,CPZ
Genomic distribution of SEs associated with GPR78
Genome Browser

The strength of the tissue affected by the gene

Expression of GPR78

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)