Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000115159
Gene: GPD2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:156435290-156613735 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077600237 chr2:156378892-156439490 Sample_02_0776 Pancreas EndoC-BH1 237 16 1364 80 0 161 401 GPD2,NR4A2
SE_02_003300580 chr2:156422810-156491708 Sample_02_0033 Pancreas pancreatic-islets-F 580 11 1518 84 1 213 354 GPD2
SE_02_074900654 chr2:156428062-156440088 Sample_02_0749 Mammary gland HCC1599_GSI 654 3 255 19 0 48 326 GPD2
SE_02_058600422 chr2:156428540-156493809 Sample_02_0586 Chordal patient-derived chordoma MGH_4 422 17 1421 79 1 192 354 GPD2
SE_02_074800928 chr2:156428728-156440072 Sample_02_0748 Mammary gland HCC1599_WO 928 4 237 17 0 48 326 GPD2
SE_02_126600873 chr2:156429258-156446343 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 873 3 360 27 0 48 326 GPD2
SE_02_126500869 chr2:156429306-156446420 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 869 5 358 27 0 48 326 GPD2
SE_02_126401021 chr2:156429332-156446631 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1021 4 361 27 0 48 326 GPD2
SE_02_092800488 chr2:156429433-156490787 Sample_02_0928 Peripheral blood neutrophils_Ecoli 488 17 1343 76 1 178 354 GPD2
SE_02_056900766 chr2:156429451-156483864 Sample_02_0569 Periodontal ligament mesenchymal stem cell 766 14 1188 70 1 112 354 GPD2
SE_02_078200193 chr2:156429649-156542612 Sample_02_0782 Blood MEC1 193 30 2491 153 4 386 529 GPD2
SE_02_072100891 chr2:156429761-156439521 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 891 3 201 16 0 38 326 GPD2
SE_01_005800458 chr2:156429996-156465070 Sample_01_0058 Prostate PC-3 458 5 751 51 1 76 326 GPD2
SE_02_049200645 chr2:156430074-156478345 Sample_02_0492 Pharyng Detroit 562_LPS 645 8 1057 63 1 105 354 GPD2
SE_02_085300389 chr2:156430120-156469497 Sample_02_0853 Mammary gland MCF7L-TamR 389 11 840 54 1 78 326 GPD2
SE_02_157300387 chr2:156430144-156477483 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 387 21 1035 63 1 98 354 GPD2
SE_02_111100691 chr2:156430187-156487028 Sample_02_1111 Other HGrC1_SMAD2/3KO 691 27 1250 74 1 135 354 GPD2
SE_02_020900737 chr2:156430191-156486782 Sample_02_0209 Lung MRC-5_MRC5_1DPT 737 10 1246 74 1 135 354 GPD2
SE_02_049100806 chr2:156430204-156478255 Sample_02_0491 Pharyng Detroit 562-Control 806 8 1052 63 1 103 354 GPD2
SE_02_126301438 chr2:156430212-156457713 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1438 6 591 43 1 57 326 GPD2
SE_02_064800565 chr2:156430263-156477665 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 565 15 1034 63 1 98 354 GPD2
SE_02_103800450 chr2:156430324-156477342 Sample_02_1038 Pharynx FaDu LPS 450 16 1032 63 1 98 354 GPD2
SE_02_142600842 chr2:156430392-156446841 Sample_02_1426 Shoulder fibroblast_341 842 4 353 27 0 44 326 GPD2
SE_02_077000888 chr2:156430402-156483737 Sample_02_0770 Ovary OVCA429_shLuc 888 26 1175 70 1 108 354 GPD2
SE_02_064500439 chr2:156430411-156477468 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 439 10 1029 63 1 98 354 GPD2
SE_02_093000977 chr2:156430413-156458782 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 977 9 606 43 1 60 326 GPD2
SE_02_030100790 chr2:156430420-156484468 Sample_02_0301 Neuroblastoma GIMEN 790 11 1190 72 1 108 354 GPD2
SE_02_155200270 chr2:156430425-156477477 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 270 11 1028 63 1 98 354 GPD2
SE_02_103700621 chr2:156430427-156474996 Sample_02_1037 Pharynx FaDu Control 621 10 969 60 1 87 326 GPD2
SE_02_136201049 chr2:156430468-156484564 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 1049 13 1191 72 1 108 354 GPD2
SE_02_064900454 chr2:156430672-156477730 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 454 12 1027 63 1 98 354 GPD2
SE_02_065000339 chr2:156430773-156477481 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 339 9 1021 63 1 98 354 GPD2
SE_02_081700970 chr2:156430786-156439488 Sample_02_0817 Ovary Epithelial ovarian cancer 970 2 181 16 0 38 326 GPD2
SE_02_088601022 chr2:156431236-156477298 Sample_02_0886 Skin foreskin_ p63KLF4 1022 10 1013 63 1 98 354 GPD2
SE_02_147000688 chr2:156431715-156456812 Sample_02_1470 Umbilical Vein H441 688 6 545 43 1 43 326 GPD2
SE_02_103500944 chr2:156431846-156492444 Sample_02_1035 Mammary gland HCC70_Vehicle 944 12 1334 75 1 172 354 GPD2
SE_02_103601070 chr2:156431874-156492462 Sample_02_1036 Mammary gland HCC70_XY018 1070 18 1332 75 1 172 354 GPD2
SE_02_118601103 chr2:156444639-156478568 Sample_02_1186 Brain GBM15 1103 9 747 37 1 63 28 GPD2
SE_02_064400820 chr2:156446107-156477469 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 820 9 696 36 1 54 28 GPD2
SE_02_047500782 chr2:156454072-156476876 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 782 7 508 23 0 54 28 GPD2
SE_02_071000857 chr2:156454437-156467883 Sample_02_0710 Pancreas hN34_organoid 857 10 275 12 0 32 0 GPD2
SE_02_075701088 chr2:156457669-156476349 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 1088 8 423 19 0 40 25 GPD2
SE_02_075400180 chr2:156461781-156476635 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 180 3 328 13 0 28 28 GPD2
SE_02_122900513 chr2:156649655-156724952 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 513 27 1845 30 3 399 0 GPD2,NR4A2
SE_02_117200486 chr2:156718731-156738283 Sample_02_1172 Embryo H9 WT 486 5 569 3 0 88 0 GPD2
SE_02_075500449 chr2:156719064-156728393 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 449 1 331 2 0 18 0 GPD2
SE_02_075200458 chr2:156719295-156728714 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 458 1 334 2 0 19 0 GPD2
SE_02_086000664 chr2:156719398-156727697 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 664 6 305 1 0 18 0 GPD2
SE_02_075600577 chr2:156719414-156729741 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 577 1 356 2 0 19 0 GPD2
SE_02_056000583 chr2:156719498-156726957 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 583 7 285 0 0 7 0 GPD2
SE_02_110400763 chr2:156777709-156807682 Sample_02_1104 Brain NB-69 763 12 688 11 2 184 0 GPD2

Genomic distribution of SEs associated with GPD2

The strength of the tissue affected by the gene


Expression of GPD2