SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000111087
Gene: GLI1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:57459785-57472268 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104602023 chr12:57449444-57475587 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2023 8 623 48 3 344 2805 INHBE,ARHGAP9,GLI1,INHBC,MARS,MBD6,DDIT3,MIR616,MIR6758
SE_02_044600475 chr12:57450634-57476166 Sample_02_0446 Bone osteosarcoma tumor P2 475 3 618 50 2 353 2743 INHBE,ARHGAP9,GLI1,INHBC,MARS,MBD6,DDIT3,MIR616,MIR6758
SE_02_038000522 chr12:57452219-57464497 Sample_02_0380 Skeletal muscle RH18 522 1 275 23 2 177 893 GLI1,INHBE,ARHGAP9,MARS,INHBC
SE_02_113600521 chr12:57452290-57463446 Sample_02_1136 Bone U2OS-anaphase/telophase 521 2 241 21 2 167 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_108000333 chr12:57452500-57463908 Sample_02_1080 Muscle JR1 shCtrl 333 6 250 22 2 155 814 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_067600114 chr12:57452626-57462905 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 114 3 220 18 2 150 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758,SLC26A10
SE_02_118400045 chr12:57452644-57476191 Sample_02_1184 Brain GBM13 45 4 576 48 2 330 2695 INHBE,ARHGAP9,GLI1,MARS,MBD6,DDIT3,MIR616,INHBC,MIR6758
SE_02_050600428 chr12:57452649-57463300 Sample_02_0506 Esophagus TE5_1 428 2 232 21 2 150 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_051700418 chr12:57452650-57463313 Sample_02_0517 Esophagus TE5 418 2 232 21 2 150 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_121800614 chr12:57452730-57463186 Sample_02_1218 Bone marrow Daudi 614 7 227 20 2 150 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_106100485 chr12:57453132-57462890 Sample_02_1061 Bone TC71_WT 485 1 211 18 2 149 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_148800484 chr12:57453132-57462890 Sample_02_1488 Bone TC-71 484 1 211 18 2 149 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_122000349 chr12:57453175-57462780 Sample_02_1220 Bone marrow JJN3 349 1 208 17 2 149 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_050100347 chr12:57453240-57462701 Sample_02_0501 Blood HL-60_CTRL 347 3 205 17 2 149 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_106000642 chr12:57453310-57462816 Sample_02_1060 Bone TC71_SA2 KO 642 4 208 17 2 149 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_074100002 chr12:57453921-57465275 Sample_02_0741 Muscle RH30 2 2 266 26 2 168 1039 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_003601010 chr12:57453927-57463070 Sample_02_0036 Embryo H7 1010 2 198 19 2 149 724 GLI1,INHBE,ARHGAP9,MARS,INHBC
SE_02_001700247 chr12:57453942-57463037 Sample_02_0017 Embryo H9_ESC 247 2 197 19 2 149 724 GLI1,INHBE,ARHGAP9,MARS,INHBC
SE_02_055500477 chr12:57453961-57462901 Sample_02_0555 Other HAP1_WT 477 1 193 18 2 149 724 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_120100002 chr12:57454466-57476316 Sample_02_1201 Brain GBM37 2 2 544 46 2 330 2721 INHBE,ARHGAP9,GLI1,MARS,MBD6,DDIT3,MIR616,INHBC,MIR6758
SE_02_094300001 chr12:57456369-57463577 Sample_02_0943 Brain LNZ308 1 1 164 17 1 116 488 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_050300362 chr12:57456974-57462859 Sample_02_0503 Esophagus KYSE140_1 362 2 124 12 1 97 349 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_051500367 chr12:57456974-57462860 Sample_02_0515 Esophagus KYSE140 367 2 124 12 1 97 349 INHBE,GLI1,MARS,ARHGAP9,INHBC,MIR6758
SE_02_157201007 chr12:57458078-57463209 Sample_02_1572 iPSCs FiPSC 1007 1 108 14 1 97 194 GLI1,INHBE,MARS,ARHGAP9,INHBC,MIR6758
SE_01_003300469 chr12:57458352-57463074 Sample_01_0033 Embryo H9 469 1 96 12 1 97 186 GLI1,ARHGAP9,INHBE,MARS,INHBC
SE_02_157001300 chr12:57458390-57463151 Sample_02_1570 iPSCs EiPSC 1300 2 99 13 1 97 186 GLI1,INHBE,MARS,ARHGAP9,INHBC,MIR6758
SE_02_037300517 chr12:57458430-57463250 Sample_02_0373 Skeletal muscle RMS206 517 1 103 14 1 97 186 GLI1,ARHGAP9,INHBE,MARS,INHBC
SE_02_055900781 chr12:57459302-57462627 Sample_02_0559 iPSCs FX52 iPSCs dC-T 781 1 71 10 1 93 186 GLI1,INHBE,MARS,ARHGAP9,INHBC
SE_02_093900103 chr12:57465037-57472151 Sample_02_0939 Mammary gland MDA-MB-231_control 103 7 181 13 0 115 1082 GLI1,INHBE,MARS,DDIT3,ARHGAP9,MIR616,INHBC,MIR6758
Genomic distribution of SEs associated with GLI1
Genome Browser

The strength of the tissue affected by the gene

Expression of GLI1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)