SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000137960
Gene: GIPC2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:77979542-78138444 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_000301167 chr1:78032514-78083459 Sample_00_0003 Adrenal gland adrenal-gland_97d 1167 7 1136 104 2 88 222 GIPC2,DNAJB4
SE_02_090400830 chr1:78033102-78114480 Sample_02_0904 Heart left ventricle_DCM_LV1028 830 18 1842 172 4 113 278 GIPC2,DNAJB4
SE_01_010100833 chr1:78033182-78056157 Sample_01_0101 Pancreas pancreas_54y 833 5 524 49 1 47 187 GIPC2,DNAJB4
SE_02_091300735 chr1:78033364-78114471 Sample_02_0913 Heart left ventricle_DCM_LV1304 735 16 1838 172 4 113 278 GIPC2,DNAJB4
SE_02_090801149 chr1:78033508-78114409 Sample_02_0908 Heart left ventricle_DCM_LV1262 1149 27 1834 172 4 113 278 GIPC2,DNAJB4
SE_02_130900345 chr1:78037856-78113709 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 345 15 1729 162 3 111 278 GIPC2,DNAJB4
SE_02_094900068 chr1:78037936-78114394 Sample_02_0949 Umbilical artery HUAEC_WT 68 41 1749 163 3 113 278 GIPC2,DNAJB4
SE_02_130800310 chr1:78037974-78104998 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 310 14 1514 141 3 106 278 GIPC2,DNAJB4
SE_02_157300279 chr1:78040812-78114418 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 279 23 1695 159 3 98 278 GIPC2,DNAJB4
SE_02_091200587 chr1:78044795-78105170 Sample_02_0912 Heart left ventricle_DCM_LV1300 587 24 1369 133 3 83 278 GIPC2,DNAJB4
SE_02_089801062 chr1:78045940-78114103 Sample_02_0898 Heart left ventricle_LV1356 1062 16 1559 153 3 89 233 GIPC2,DNAJB4,NEXN
SE_02_089701056 chr1:78046040-78083347 Sample_02_0897 Heart left ventricle_LV1325 1056 12 853 82 1 60 144 GIPC2,DNAJB4,NEXN
SE_02_091001038 chr1:78046069-78114516 Sample_02_0910 Heart left ventricle_DCM_LV1275 1038 15 1569 153 3 85 196 GIPC2,DNAJB4
SE_02_095000374 chr1:78047571-78114458 Sample_02_0950 Umbilical vein HUVEC_WT 374 31 1525 150 3 72 91 GIPC2,DNAJB4,FUBP1,NEXN
SE_00_005201167 chr1:78047841-78114518 Sample_00_0052 Heart left ventricle 3y 1167 30 1517 149 3 72 91 GIPC2,DNAJB4,NEXN
SE_02_083100850 chr1:78052076-78081264 Sample_02_0831 Umblical vein HUVECs_TNF0min 850 17 637 54 1 34 35 GIPC2,DNAJB4,NEXN
SE_01_006300102 chr1:78054733-78114597 Sample_01_0063 Skeletal muscle skeletal-muscle-myoblast 102 10 1348 130 3 67 91 GIPC2,DNAJB4
SE_01_011500294 chr1:78054826-78114529 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 294 11 1344 129 3 67 91 GIPC2,DNAJB4,FUBP1,NEXN
SE_01_005600512 chr1:78057660-78105496 Sample_01_0056 Bone osteoblast 512 8 1073 99 3 59 91 GIPC2
SE_02_127900164 chr1:78057971-78114500 Sample_02_1279 Bone Mesenchymal stem cells 164 12 1287 121 3 66 91 GIPC2
SE_02_017201141 chr1:78058236-78114717 Sample_02_0172 Lung IMR-90_quiescent 1141 10 1284 122 3 66 91 GIPC2
SE_02_132800306 chr1:78058963-78113814 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 306 10 1246 120 3 64 91 GIPC2
SE_02_131100897 chr1:78058982-78114508 Sample_02_1311 Bone marrow HDMSCs 897 14 1264 120 3 66 91 GIPC2
SE_02_086700648 chr1:78058983-78114388 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 648 26 1261 120 3 66 91 GIPC2
SE_02_113700873 chr1:78059016-78105121 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 873 10 1031 98 3 59 91 GIPC2,DNAJB4
SE_02_155200673 chr1:78060278-78114307 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 673 26 1237 120 3 66 91 GIPC2
SE_02_020900693 chr1:78060705-78113499 Sample_02_0209 Lung MRC-5_MRC5_1DPT 693 9 1198 116 3 64 91 GIPC2
SE_02_127100148 chr1:78061149-78114441 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 148 16 1210 117 3 64 91 GIPC2
SE_02_137800380 chr1:78061154-78114625 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 380 19 1215 118 3 64 91 GIPC2
SE_02_045200822 chr1:78061157-78114425 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 822 14 1210 117 3 64 91 GIPC2,DNAJB4
SE_02_131000759 chr1:78061204-78114471 Sample_02_1310 Bone marrow ASMSCs 759 10 1211 117 3 63 91 GIPC2
SE_02_060500435 chr1:78061217-78113474 Sample_02_0605 Skin Skin Fibroblast_DMSO 435 13 1181 113 3 60 91 GIPC2,NEXN,FUBP1
SE_02_137700658 chr1:78061273-78114253 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 658 13 1202 117 3 60 91 GIPC2
SE_02_060600553 chr1:78061346-78114441 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 553 15 1205 117 3 60 91 GIPC2,NEXN,FUBP1
SE_02_061000642 chr1:78061373-78107501 Sample_02_0610 Liposarcoma MLS 1765-92 642 14 1051 98 3 53 91 GIPC2
SE_02_143700187 chr1:78061567-78114490 Sample_02_1437 Liver LSEC-TNF 187 15 1203 117 3 60 91 GIPC2
SE_02_113300545 chr1:78061583-78105204 Sample_02_1133 Liver Hepatic stellate cells 545 10 971 95 3 53 91 GIPC2
SE_02_143800181 chr1:78061629-78114487 Sample_02_1438 Liver LSEC 181 15 1201 117 3 60 91 GIPC2
SE_01_001800300 chr1:78061750-78105451 Sample_01_0018 Submandibular Salivary Gland ACC112 300 7 973 95 3 53 91 GIPC2
SE_02_143600165 chr1:78062216-78114453 Sample_02_1436 Liver LSEC-Ctrl 165 15 1185 115 3 59 91 GIPC2
SE_02_090100861 chr1:78067906-78105155 Sample_02_0901 Heart left ventricle_LV1471 861 15 826 82 2 51 91 GIPC2
SE_00_002100887 chr1:78068143-78114599 Sample_00_0021 Lung lung_3y 887 15 1054 105 2 58 91 GIPC2
SE_02_010700398 chr1:78069846-78106647 Sample_02_0107 Endometrium EEC16 398 4 831 77 2 49 91 GIPC2
SE_02_010800460 chr1:78070260-78114799 Sample_02_0108 Fallopian tube FT246 460 6 1020 100 2 56 91 GIPC2
SE_02_157100585 chr1:78070339-78105298 Sample_02_1571 Fibroblast Fibroblast cells 585 9 779 76 2 49 91 GIPC2
SE_02_156900854 chr1:78070427-78080997 Sample_02_1569 Endothelial Endothelial cells 854 4 236 16 0 22 35 GIPC2
SE_02_041900251 chr1:78070526-78113623 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 251 10 975 96 2 53 91 GIPC2
SE_02_002700642 chr1:78071423-78114733 Sample_02_0027 Umbilical vein HUVEC_VEGF_4h 642 10 991 99 2 42 91 GIPC2
SE_02_011100639 chr1:78078976-78105284 Sample_02_0111 Ovaries IOE4 639 4 591 60 2 32 91 GIPC2,DNAJB4
SE_02_049800243 chr1:78079399-78113454 Sample_02_0498 Fetal lung IMR90 Senescent_1 243 17 782 78 2 37 91 GIPC2
SE_02_042000297 chr1:78082283-78114607 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 297 7 743 76 2 34 56 GIPC2
SE_02_137400971 chr1:78082529-78114051 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 971 16 718 74 2 28 56 GIPC2
SE_02_088601601 chr1:78090173-78114679 Sample_02_0886 Skin foreskin_ p63KLF4 1601 5 572 57 2 25 56 GIPC2
SE_02_026200822 chr1:78090458-78105418 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 822 3 342 33 2 18 56 GIPC2
SE_02_137600457 chr1:78090782-78114485 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 457 13 559 54 2 25 56 GIPC2
SE_02_039500539 chr1:78091034-78113007 Sample_02_0395 Mammary gland BT-549 539 6 517 48 2 23 56 GIPC2
SE_02_026100848 chr1:78094049-78105538 Sample_02_0261 Osteoblastic hFOB_differentiated 848 2 270 15 1 18 56 GIPC2
SE_02_156900429 chr1:78094350-78104638 Sample_02_1569 Endothelial Endothelial cells 429 3 237 15 1 14 56 GIPC2
SE_02_156800438 chr1:78094358-78114585 Sample_02_1568 Heart Cardiac progenitor cells 438 5 487 38 1 25 56 GIPC2,DNAJB4
SE_01_002600822 chr1:78094440-78103510 Sample_01_0026 Umbilical vein endothelial-cell-of-umbilical-vein 822 2 208 14 1 13 56 GIPC2
SE_02_087901567 chr1:78094495-78105337 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1567 4 255 15 1 18 56 GIPC2
SE_02_076301067 chr1:78094557-78114437 Sample_02_0763 Podocyte podocyte_DEX 1067 6 477 36 1 25 56 GIPC2
SE_02_049901362 chr1:78094589-78113850 Sample_02_0499 Fetal lung IMR90 IR Senescence 1362 7 461 36 1 23 56 GIPC2
SE_02_137500431 chr1:78094597-78114437 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 431 13 477 36 1 25 56 GIPC2
SE_02_062000984 chr1:78094637-78102821 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 984 4 192 12 1 8 53 GIPC2,DNAJB4
SE_02_127200191 chr1:78094821-78112408 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 191 10 419 23 1 23 45 GIPC2,DNAJB4
SE_02_041400138 chr1:78094883-78105113 Sample_02_0414 Foreskin BJEL 138 5 241 14 1 18 33 GIPC2
SE_02_136400410 chr1:78095047-78113843 Sample_02_1364 Pancreas pancreatic tumor_associated fibroblasts_triptolide_18h 410 7 449 35 1 23 22 GIPC2
SE_02_135501164 chr1:78095064-78105479 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 1164 2 247 13 1 18 21 GIPC2,DNAJB4
SE_02_009200358 chr1:78095161-78105091 Sample_02_0092 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_3 358 6 231 13 1 18 7 GIPC2
SE_02_093601052 chr1:78095163-78105097 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 1052 2 232 13 1 18 7 GIPC2,DNAJB4
SE_02_009000238 chr1:78095196-78103361 Sample_02_0090 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_6 238 2 183 12 1 13 2 GIPC2,DNAJB4
SE_02_063801111 chr1:78095335-78105801 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 1111 8 253 13 1 18 0 GIPC2
SE_02_093801321 chr1:78095398-78105192 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1321 3 231 13 1 18 0 GIPC2,DNAJB4
Genomic distribution of SEs associated with GIPC2
Genome Browser

The strength of the tissue affected by the gene

Expression of GIPC2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)