Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000137270 |
| Gene: | GCM1 | Gene type: | protein_coding |
| Strand: | - | External links: |
|
| Genomic region: | chr6:53126961-53148841 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_103601556 | chr6:53068581-53171260 |
Sample_02_1036 | Mammary gland | HCC70_XY018 | 1556 | 37 | 2546 | 98 | 2 | 130 | 1288 | FBXO9,GCM1,ICK |
| SE_02_063000038 | chr6:53099533-53171957 |
Sample_02_0630 | Gastrointestinal Stromal | GIST-T1_Imatinib | 38 | 29 | 1902 | 77 | 2 | 83 | 758 | FBXO9,GCM1,ICK |
| SE_02_143400715 | chr6:53104688-53135708 |
Sample_02_1434 | Trophoblast | trophoblast stem cells | 715 | 6 | 813 | 40 | 0 | 48 | 516 | GCM1,FBXO9,ICK |
| SE_02_080800632 | chr6:53104837-53134529 |
Sample_02_0808 | Ovary | RMG1_ARID1A KO | 632 | 25 | 778 | 37 | 0 | 45 | 516 | GCM1,FBXO9,ICK |
| SE_02_129700419 | chr6:53104895-53142696 |
Sample_02_1297 | Lung | lung | 419 | 12 | 988 | 49 | 1 | 61 | 516 | GCM1,FBXO9,ICK |
| SE_02_068701394 | chr6:53105854-53122798 |
Sample_02_0687 | Lung | NCI-H146_no infection | 1394 | 7 | 435 | 17 | 0 | 2 | 0 | FBXO9,ICK,GCM1 |
| SE_02_069700304 | chr6:53106117-53123291 |
Sample_02_0697 | Lung | NCI-H1048-cas9_sgHROSA | 304 | 13 | 442 | 19 | 0 | 2 | 0 | FBXO9,ICK,GCM1 |
| SE_00_003100777 | chr6:53106897-53169661 |
Sample_00_0031 | Placenta | placenta | 777 | 9 | 1684 | 72 | 2 | 83 | 620 | GCM1,FBXO9,ICK,GC1,GSTA4 |
| SE_02_143500806 | chr6:53107425-53134979 |
Sample_02_1435 | Trophoblast | trophoblast stem cells_MSX2_KD | 806 | 6 | 726 | 38 | 0 | 45 | 516 | GCM1,FBXO9,ICK |
| SE_02_093000382 | chr6:53107639-53171835 |
Sample_02_0930 | Mid-gestation placenta | trophoblast__SynT | 382 | 37 | 1715 | 76 | 2 | 83 | 620 | GCM1,FBXO9,ICK,GSTA4 |
| SE_02_035400802 | chr6:53109176-53135920 |
Sample_02_0354 | Colon | Colo205 | 802 | 4 | 704 | 41 | 0 | 51 | 516 | GCM1,FBXO9,ICK |
| SE_02_016200217 | chr6:53110994-53120717 |
Sample_02_0162 | Prostate | C4-2B_vehicle_24h | 217 | 2 | 255 | 11 | 0 | 2 | 0 | FBXO9,ICK,GCM1 |
| SE_02_016300315 | chr6:53111484-53120310 |
Sample_02_0163 | Prostate | C4-2B_SR2211_24h | 315 | 6 | 224 | 11 | 0 | 2 | 0 | FBXO9,ICK,GCM1 |
| SE_02_156300023 | chr6:53112983-53143365 |
Sample_02_1563 | Gastrointestinal Stromal | GIST-12_SDHC deletion | 23 | 12 | 799 | 42 | 1 | 61 | 516 | GCM1,FBXO9 |
| SE_02_063100341 | chr6:53135683-53146165 |
Sample_02_0631 | Gastrointestinal Stromal | GIST-T1_JQ1 | 341 | 2 | 281 | 13 | 2 | 20 | 62 | GCM1 |
| SE_02_062900661 | chr6:53139400-53146829 |
Sample_02_0629 | Gastrointestinal Stromal | GIST-T1_DMSO | 661 | 2 | 205 | 9 | 2 | 6 | 62 | GCM1 |
| SE_02_092900441 | chr6:53142943-53170069 |
Sample_02_0929 | Mid-gestation placenta | trophoblast__CytT | 441 | 20 | 743 | 23 | 1 | 22 | 104 | GCM1,GSTA4 |
| SE_02_143400978 | chr6:53152131-53170355 |
Sample_02_1434 | Trophoblast | trophoblast stem cells | 978 | 3 | 489 | 15 | 0 | 7 | 0 | GCM1 |
| SE_00_000500318 | chr6:53171801-53251447 |
Sample_00_0005 | Blood | B-cell | 318 | 12 | 2337 | 296 | 2 | 27 | 0 | GCM1 |
| SE_02_078400232 | chr6:53172124-53251304 |
Sample_02_0784 | Blood | OSU-CLL | 232 | 27 | 2327 | 294 | 2 | 27 | 0 | MIR5685,GCM1 |
| SE_02_038700041 | chr6:53172251-53249811 |
Sample_02_0387 | Lymph node | CD19+_B_cells_nhl_FL1-2 | 41 | 40 | 2273 | 292 | 2 | 23 | 0 | GCM1,ELOVL5 |
| SE_02_012400300 | chr6:53176071-53202612 |
Sample_02_0124 | Embryo | Embryonic-stem-cells_Naive | 300 | 4 | 715 | 93 | 1 | 1 | 0 | GCM1 |
| SE_02_099400544 | chr6:53188357-53216998 |
Sample_02_0994 | Blood | MOLM13_SIK3TQ | 544 | 18 | 812 | 126 | 0 | 5 | 0 | GCM1,MIR5685 |
| SE_02_099300967 | chr6:53192755-53214910 |
Sample_02_0993 | Blood | MOLM-13_empty | 967 | 7 | 630 | 102 | 0 | 0 | 0 | GCM1,MIR5685 |
| SE_02_099500902 | chr6:53196534-53217033 |
Sample_02_0995 | Blood | MOLM-13_empty vector | 902 | 11 | 606 | 95 | 0 | 4 | 0 | GCM1 |
Genomic distribution of SEs associated with GCM1