SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000160766
Gene: GBAP1 Gene type: transcribed_unprocessed_pseudogene
Strand: - External links:
Genomic region: chr1:155213821-155227422 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103501580 chr1:155210726-155253243 Sample_02_1035 Mammary gland HCC70_Vehicle 1580 11 1051 76 6 68 3569 MTX1,GBA,GBAP1,FAM189B,KRTCAP2,TRIM46,HCN3,MUC1,SCAMP3,MIR92B,PKLR,CLK2,THBS3
SE_02_021600298 chr1:155211582-155248287 Sample_02_0216 Skin NHEK_scramble 298 12 917 60 6 22 2937 MTX1,GBA,GBAP1,FAM189B,CLK2,SCAMP3,MIR92B,KRTCAP2,TRIM46,MUC1,THBS3,HCN3
SE_02_016700733 chr1:155218225-155245620 Sample_02_0167 Mammary gland HCC1954_LCC2 733 4 690 48 3 0 1550 GBA,GBAP1,CLK2,SCAMP3,MIR92B,KRTCAP2,MTX1,FAM189B,TRIM46,MUC1,THBS3,HCN3
SE_02_001100656 chr1:155218986-155228515 Sample_02_0011 Kidney A-498_wtVHL 656 5 233 14 2 0 167 GBAP1,GBA,CLK2,SCAMP3,MIR92B,KRTCAP2,MTX1,FAM189B,TRIM46,MUC1,THBS3,HCN3
SE_02_026400389 chr1:155222400-155229064 Sample_02_0264 Skeletal muscle 7250-empty 389 1 146 15 2 0 141 GBAP1,GBA,CLK2,SCAMP3,MIR92B,KRTCAP2,MTX1,FAM189B,TRIM46,MUC1,THBS3,HCN3
SE_02_008500279 chr1:155222958-155228743 Sample_02_0085 Oral cavity KB_IL-1alpha_5Z-7-oxozeaenol 279 1 130 13 2 0 141 GBAP1,GBA,CLK2,SCAMP3,MIR92B,KRTCAP2,MTX1,FAM189B,TRIM46,MUC1,THBS3,HCN3
SE_02_026500466 chr1:155223148-155228994 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 466 1 130 14 2 0 141 GBAP1,GBA,CLK2,SCAMP3,MIR92B,KRTCAP2,MTX1,FAM189B,TRIM46,MUC1,THBS3,HCN3
SE_02_146300254 chr1_GL383519v1_alt:24763-83195 Sample_02_1463 Ovary A2780_shMBD3.232 254 12 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_122900785 chr1_GL383519v1_alt:24992-83051 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 785 32 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_103500372 chr1_GL383519v1_alt:25470-109498 Sample_02_1035 Mammary gland HCC70_Vehicle 372 32 0 0 0 0 0 GBA,PKLR,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_117500754 chr1_GL383519v1_alt:28974-79106 Sample_02_1175 Brain GBM03 754 13 0 0 0 0 0 GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_109900820 chr1_GL383519v1_alt:29025-82772 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 820 17 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_065900489 chr1_GL383519v1_alt:29102-82988 Sample_02_0659 Lung H23 489 19 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_064200517 chr1_GL383519v1_alt:29120-83435 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 517 16 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_128001394 chr1_GL383519v1_alt:29494-82873 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1394 12 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_119700974 chr1_GL383519v1_alt:29551-83052 Sample_02_1197 Brain GBM33 974 13 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_147500996 chr1_GL383519v1_alt:30781-83508 Sample_02_1475 Bone CHLA-25 996 10 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_148501113 chr1_GL383519v1_alt:31021-83087 Sample_02_1485 Bone SK-ES-1 1113 11 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_085400691 chr1_GL383519v1_alt:31079-79159 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 691 8 0 0 0 0 0 GBA,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_055300227 chr1_GL383519v1_alt:31175-83067 Sample_02_0553 Other HSSY2 shCt 227 17 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_147600614 chr1_GL383519v1_alt:31236-82823 Sample_02_1476 Bone EW-1 614 8 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_148000647 chr1_GL383519v1_alt:31279-82857 Sample_02_1480 Bone MHH-ES-1 647 11 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_077400205 chr1_GL383519v1_alt:31372-83181 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 205 8 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_097900860 chr1_GL383519v1_alt:31479-82884 Sample_02_0979 Brain JN14-BS1_H3.3K27M 860 14 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_143301250 chr1_GL383519v1_alt:31714-82930 Sample_02_1433 Bone A673 STAG2 null 1250 10 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
SE_02_143201468 chr1_GL383519v1_alt:31807-82827 Sample_02_1432 Bone A673 STAG2 WT 1468 11 0 0 0 0 0 GBA,HCN3,CLK2,GBAP1,SCAMP3,FAM189B
Genomic distribution of SEs associated with GBAP1
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The strength of the tissue affected by the gene

Expression of GBAP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)