SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000244300
Gene: GATA2-AS1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr3:128489212-128502970 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_143400103 chr3:128475471-128506842 Sample_02_1434 Trophoblast trophoblast stem cells 103 6 907 62 8 335 1603 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_095000129 chr3:128479678-128498906 Sample_02_0950 Umbilical vein HUVEC_WT 129 9 531 38 5 319 1535 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_083400307 chr3:128479767-128498173 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 307 4 505 36 5 315 1513 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_083600384 chr3:128479809-128498115 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 384 4 499 36 5 315 1509 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_129700234 chr3:128480131-128498012 Sample_02_1297 Lung lung 234 5 491 36 5 308 1440 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_110200063 chr3:128480197-128497885 Sample_02_1102 Brain LA-N-5 63 1 488 36 5 305 1431 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_083700453 chr3:128480236-128498127 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 453 3 490 36 5 314 1427 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_146900139 chr3:128480304-128498105 Sample_02_1469 Umbilical Vein HUVEC 139 2 489 36 5 314 1417 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_046000261 chr3:128480310-128497804 Sample_02_0460 Blood ME-1_I-10-49_6h 261 6 486 36 5 299 1415 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_086900895 chr3:128480312-128497744 Sample_02_0869 Fibroblast VH10_NO_UV 895 10 484 36 5 297 1414 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_147100441 chr3:128480312-128498059 Sample_02_1471 Blood Outgrowth Endothelia BOEC 441 2 489 36 5 314 1414 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_082100103 chr3:128480501-128498078 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 103 2 483 35 5 307 1371 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_061700175 chr3:128480826-128498774 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 175 3 492 35 4 309 1310 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_048400110 chr3:128480865-128498028 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 110 7 469 33 4 306 1302 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_128900118 chr3:128481185-128497739 Sample_02_1289 Lung NCI-H526_p8-15 118 5 451 33 4 266 1213 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_055500069 chr3:128481305-128498332 Sample_02_0555 Other HAP1_WT 69 3 459 33 4 280 1195 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_045900186 chr3:128481311-128498136 Sample_02_0459 Blood ME-1_DMSO_6h 186 4 455 33 4 277 1194 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_01_010400841 chr3:128481313-128496772 Sample_01_0104 Lung upper lobe of left lung 841 5 420 29 3 251 1194 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_114800158 chr3:128481336-128498219 Sample_02_1148 Kidney WT 9-12_control_vehicle 158 3 457 33 4 277 1189 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_04_000100334 chr3:128481370-128498922 Sample_04_0001 Blood heat shocked K562 334 1 480 35 4 279 1185 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_068200298 chr3:128481619-128497929 Sample_02_0682 Blood Kasumi-1 298 3 442 32 3 269 1149 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_048700132 chr3:128481667-128498062 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 132 6 442 32 3 277 1134 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_082000107 chr3:128481681-128497929 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 107 3 441 32 3 269 1131 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_082200308 chr3:128481721-128498250 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 308 4 445 32 3 277 1125 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_109500254 chr3:128481726-128498060 Sample_02_1095 Blood CD34 Erythroid cells_Don002 254 4 441 32 3 277 1121 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_130100283 chr3:128481745-128498091 Sample_02_1301 Blood PER-117 283 3 440 32 3 277 1120 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_076500215 chr3:128481807-128499471 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 215 6 486 34 3 278 1098 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_111100976 chr3:128481911-128498110 Sample_02_1111 Other HGrC1_SMAD2/3KO 976 6 432 32 3 267 1082 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_129600251 chr3:128482108-128497993 Sample_02_1296 Perigastric lymph node Perigastric lymph node 251 4 423 32 3 253 1041 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_109600281 chr3:128482117-128498093 Sample_02_1096 Blood CD34 Erythroid cells_Don003 281 3 421 32 3 260 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_128000489 chr3:128482166-128498392 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 489 4 423 32 3 262 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_076400135 chr3:128482175-128497781 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 135 6 414 31 3 245 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_134300020 chr3:128482215-128496159 Sample_02_1343 Leukophereses leukophereses_p195 20 2 366 27 2 215 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_063600170 chr3:128482232-128497927 Sample_02_0636 Skin BJ5ta 170 3 416 31 3 249 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_129900286 chr3:128482240-128498259 Sample_02_1299 Liver liver 286 4 420 31 3 257 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_054600188 chr3:128482337-128497872 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 188 5 412 31 3 247 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_048900107 chr3:128482367-128498146 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 107 6 415 31 3 256 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_054700132 chr3:128482382-128497762 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 132 7 410 31 3 239 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_082300231 chr3:128482430-128497876 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 231 4 410 31 3 245 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_140700090 chr3:128482476-128498230 Sample_02_1407 Prostate LNCaP_R1881 4h 90 4 416 31 3 255 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_064300887 chr3:128482484-128497982 Sample_02_0643 Mammary gland MDA-MB-436 887 5 412 31 3 248 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_129800197 chr3:128482615-128497976 Sample_02_1298 Hilar lymph node Hilar lymph node 197 2 408 31 3 247 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_140900149 chr3:128482718-128498130 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 149 3 404 31 3 253 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_138100206 chr3:128482737-128498078 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 206 6 404 31 3 253 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_138300216 chr3:128482796-128497897 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 216 7 402 31 3 245 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_140600102 chr3:128482840-128498421 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 102 5 406 30 3 255 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_136300238 chr3:128482883-128498168 Sample_02_1363 Blood Hudep2 238 4 402 30 3 253 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_140800166 chr3:128483022-128498605 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 166 5 409 31 3 254 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_066400162 chr3:128483501-128497713 Sample_02_0664 Prostate LNCaP_DMSO 162 4 376 29 3 209 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_138200123 chr3:128483572-128498153 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 123 4 383 29 3 227 1040 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_045300757 chr3:128483875-128498199 Sample_02_0453 Neuroblastoma SJNB3 757 6 371 28 3 225 1000 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_140500277 chr3:128484123-128497914 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 277 5 364 28 3 204 942 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_067300046 chr3:128484132-128498170 Sample_02_0673 Prostate LNCAP_FA 46 3 367 28 3 212 937 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_050900041 chr3:128484399-128493509 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 41 3 215 12 2 159 923 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_054300115 chr3:128485356-128494092 Sample_02_0543 Brain Kelly_vehicle 115 1 215 14 2 154 923 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_110600219 chr3:128485562-128494598 Sample_02_1106 Brain NGP 219 1 230 15 2 155 917 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_123500093 chr3:128485573-128494582 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 93 1 228 15 2 155 910 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_051300031 chr3:128486435-128493216 Sample_02_0513 Prostate LNCaP95_shARfl_ETOH 31 1 151 9 1 119 645 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_01_010101520 chr3:128486886-128493111 Sample_01_0101 Pancreas pancreas_54y 1520 1 133 9 1 109 541 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_051400026 chr3:128487535-128493224 Sample_02_0514 Prostate LNCaP95_shARfl_DHT 26 1 123 8 1 97 465 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_124500241 chr3:128488014-128493180 Sample_02_1245 Brain LAN5_Ethanol 241 1 107 6 1 76 329 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
SE_02_051200042 chr3:128488097-128493075 Sample_02_0512 Prostate LNCaP95_shARv7_DHT 42 1 103 6 1 73 275 GATA2,GATA2-AS1,DNAJB8,DNAJB8-AS1,LOC90246
Genomic distribution of SEs associated with GATA2-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of GATA2-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)