SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000180447
Gene: GAS1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr9:86944362-86947506 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_096800215 chr9:86640142-86676410 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 215 8 1001 11 4 103 0 GAS1
SE_02_108000975 chr9:86652197-86682732 Sample_02_1080 Muscle JR1 shCtrl 975 16 876 7 4 72 0 GAS1
SE_02_084000085 chr9:86652499-86751244 Sample_02_0840 Embryo hNPCs_R1159Q/+ 85 31 2885 42 8 150 0 GAS1
SE_02_055600158 chr9:86669607-86706975 Sample_02_0556 iPSCs BOFS hiPSC cl1 158 8 1035 5 3 90 0 GAS1
SE_02_008700213 chr9:86671220-86773188 Sample_02_0087 Pancreas MiaPaca2 213 7 3011 59 7 181 0 GAS1
SE_02_072300196 chr9:86671775-86770184 Sample_02_0723 Pancreas MIAPaca2 WT 196 30 2907 54 7 179 0 GAS1
SE_02_155200289 chr9:86695093-86737176 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 289 14 1268 25 3 52 0 GAS1
SE_02_087600078 chr9:86695456-86768455 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 78 30 2191 46 6 107 0 GAS1
SE_02_087700165 chr9:86695504-86751829 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 165 22 1695 32 3 69 0 GAS1
SE_02_083900783 chr9:86696062-86733381 Sample_02_0839 Embryo hNPCs_K755R/+ 783 10 1122 22 3 50 0 GAS1
SE_02_126301635 chr9:86696185-86742447 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1635 8 1396 27 3 54 0 GAS1
SE_02_108000230 chr9:86697482-86751804 Sample_02_1080 Muscle JR1 shCtrl 230 24 1638 32 3 65 0 GAS1
SE_02_061100361 chr9:86698186-86752322 Sample_02_0611 Liposarcoma DDLPS_T1 361 26 1641 32 3 65 0 GAS1
SE_00_002500527 chr9:86699645-86752032 Sample_00_0025 Muscle of leg muscle-of-leg 527 9 1590 32 2 65 0 GAS1
SE_00_002600543 chr9:86699900-86733864 Sample_00_0026 Muscle of trunk muscle-of-trunk 543 6 1038 22 2 46 0 GAS1
SE_00_003100774 chr9:86702745-86724218 Sample_00_0031 Placenta placenta 774 4 611 8 1 33 0 GAS1
SE_02_156600688 chr9:86705836-86735972 Sample_02_1566 Dermal Dermal fibroblast 688 4 929 22 1 39 0 GAS1
SE_02_026500406 chr9:86707092-86768074 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 406 10 1848 46 4 94 0 GAS1
SE_02_039500759 chr9:86712344-86735654 Sample_02_0395 Mammary gland BT-549 759 5 729 22 0 39 0 GAS1
SE_02_158400894 chr9:86712836-86768000 Sample_02_1584 Brain U87 GBM_Mock 894 12 1671 46 3 94 0 GAS1
SE_02_157100868 chr9:86713093-86735416 Sample_02_1571 Fibroblast Fibroblast cells 868 6 697 22 0 39 0 GAS1
SE_02_008800678 chr9:86714316-86735798 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 678 4 675 21 0 38 0 GAS1
SE_02_009100346 chr9:86714330-86734961 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 346 4 654 21 0 38 0 GAS1
SE_02_135600955 chr9:86714484-86735638 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 955 5 665 21 0 38 0 GAS1
SE_02_035900941 chr9:86720835-86751338 Sample_02_0359 Colon Colo741 941 3 970 29 0 37 0 GAS1
SE_02_018400535 chr9:86721473-86751278 Sample_02_0184 Skin SKMEL30 535 5 944 28 0 35 0 GAS1
SE_02_149300807 chr9:86722044-86751114 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 807 5 924 27 0 29 0 GAS1
SE_02_155100384 chr9:86730509-86770303 Sample_02_1551 Gastrointestinal Stromal MaMel 384 7 1190 31 3 61 0 GAS1
SE_02_148200696 chr9:86784372-86802079 Sample_02_1482 Bone POE 696 6 583 11 4 43 0 GAS1
SE_02_074000522 chr9:86790053-86869487 Sample_02_0740 Muscle RH3 522 24 2391 28 11 148 0 GAS1
SE_02_108100127 chr9:86791152-86868578 Sample_02_1081 Muscle CTR shCtrl 127 40 2341 28 11 140 0 GAS1
SE_02_014000389 chr9:86791900-86809302 Sample_02_0140 Kidney RT242 389 3 585 10 5 60 0 GAS1
SE_02_087600303 chr9:86792495-86861441 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 303 24 2102 23 9 106 0 GAS1
SE_02_061100267 chr9:86793666-86823169 Sample_02_0611 Liposarcoma DDLPS_T1 267 6 943 12 4 61 0 GAS1
SE_02_084000964 chr9:86793762-86807899 Sample_02_0840 Embryo hNPCs_R1159Q/+ 964 4 503 9 4 59 0 GAS1
SE_02_036400185 chr9:86794442-86869311 Sample_02_0364 Skeletal muscle CTR 185 14 2257 27 10 145 0 GAS1
SE_02_014000090 chr9:86835026-86869627 Sample_02_0140 Kidney RT242 90 5 995 10 3 86 0 GAS1
SE_02_084000816 chr9:86836683-86857588 Sample_02_0840 Embryo hNPCs_R1159Q/+ 816 9 599 2 0 40 0 GAS1
SE_02_108000884 chr9:86836847-86861340 Sample_02_1080 Muscle JR1 shCtrl 884 19 703 3 1 45 0 GAS1
SE_02_108000955 chr9:86880261-86905116 Sample_02_1080 Muscle JR1 shCtrl 955 6 652 17 1 32 0 LOC100506834,GAS1
SE_02_037000070 chr9:86891974-86949635 Sample_02_0370 Skeletal muscle RH4 70 10 1549 52 9 46 683 GAS1
SE_02_074100483 chr9:86892194-86909988 Sample_02_0741 Muscle RH30 483 6 484 15 1 32 0 LOC100506834,GAS1
SE_02_074000325 chr9:86892198-86921916 Sample_02_0740 Muscle RH3 325 7 836 29 4 34 0 LOC100506834,GAS1
SE_02_107800302 chr9:86894012-86906391 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 302 6 324 9 1 32 0 LOC100506834,GAS1
SE_02_107900502 chr9:86894679-86906260 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 502 7 299 7 1 32 0 LOC100506834,GAS1
SE_02_141300109 chr9:86898783-86956426 Sample_02_1413 Muscle RH4_sgBRG1 109 14 1546 65 10 46 753 LOC100506834,GAS1
SE_02_037800376 chr9:86900917-86906414 Sample_02_0378 Skeletal muscle SCMC 376 1 135 4 1 27 0 GAS1
SE_02_093400573 chr9:86901013-86905370 Sample_02_0934 Embryo H7-WT 573 2 103 1 1 27 0 LOC100506834,GAS1
SE_02_093200678 chr9:86901285-86905487 Sample_02_0932 Embryo H9 WT_1 678 1 102 1 1 27 0 LOC100506834,GAS1
SE_02_014000482 chr9:86901634-86924042 Sample_02_0140 Kidney RT242 482 3 625 23 4 41 0 GAS1
SE_02_107800068 chr9:86935787-86947760 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 68 9 297 9 3 0 585 GAS1,LOC100506834
SE_02_074000696 chr9:86936204-86946548 Sample_02_0740 Muscle RH3 696 5 247 7 3 0 367 GAS1,LOC100506834
SE_02_037400288 chr9:86937534-86949285 Sample_02_0374 Skeletal muscle RMS209 288 6 293 10 3 0 683 GAS1
SE_02_037800387 chr9:86937615-86949508 Sample_02_0378 Skeletal muscle SCMC 387 3 295 10 3 0 683 GAS1
SE_02_107900229 chr9:86937782-86947767 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 229 7 250 9 2 0 585 GAS1,LOC100506834
SE_02_036900419 chr9:86938493-86949864 Sample_02_0369 Skeletal muscle RD 419 3 279 10 2 0 683 GAS1
SE_02_037900419 chr9:86938493-86949864 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 419 3 279 10 2 0 683 GAS1
SE_02_036400495 chr9:86938592-86961764 Sample_02_0364 Skeletal muscle CTR 495 4 606 55 5 5 753 GAS1
SE_00_002600593 chr9:86938727-86949692 Sample_00_0026 Muscle of trunk muscle-of-trunk 593 2 270 10 2 0 683 GAS1
SE_02_108000577 chr9:86938789-86947679 Sample_02_1080 Muscle JR1 shCtrl 577 5 222 9 2 0 585 GAS1,LOC100506834
SE_00_002500666 chr9:86938892-86949902 Sample_00_0025 Muscle of leg muscle-of-leg 666 2 269 9 2 0 683 GAS1
SE_02_093200262 chr9:86939013-86947758 Sample_02_0932 Embryo H9 WT_1 262 3 217 8 2 0 585 GAS1,LOC100506834
SE_00_001000527 chr9:86939541-86948655 Sample_00_0010 Embryo endodermal-cell 527 3 224 6 1 0 610 GAS1
SE_02_147800349 chr9:86939678-86949931 Sample_02_1478 Bone EW-3 349 1 249 7 1 0 683 LOC100506834,GAS1
SE_02_147500954 chr9:86939736-86950097 Sample_02_1475 Bone CHLA-25 954 2 255 7 1 0 683 LOC100506834,GAS1
SE_02_093400272 chr9:86939961-86947729 Sample_02_0934 Embryo H7-WT 272 4 196 6 1 0 585 GAS1,LOC100506834
SE_02_093100230 chr9:86940085-86949085 Sample_02_0931 Embryo H9 UTXKO 230 2 224 7 1 0 669 LOC100506834,GAS1
SE_02_014000262 chr9:86940342-86949991 Sample_02_0140 Kidney RT242 262 1 235 7 1 0 683 GAS1
SE_01_009500793 chr9:86940469-86947818 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 793 3 180 6 1 0 585 GAS1,LOC100506834
SE_02_093300288 chr9:86940477-86947788 Sample_02_0933 Embryo H7 UTXKO 288 3 179 6 1 0 585 GAS1,LOC100506834
SE_02_079800201 chr9:86940725-86949305 Sample_02_0798 Brain 1919 201 4 207 7 1 0 683 LOC100506834,GAS1
SE_02_063500257 chr9:86941142-86947642 Sample_02_0635 Synovial sarcoma HSSYII_Untreated 257 2 156 6 1 0 585 GAS1,LOC100506834
SE_02_085400104 chr9:86941554-86949309 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 104 2 186 7 1 0 683 LOC100506834,GAS1
SE_02_085700386 chr9:86941573-86949554 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 386 1 190 7 1 0 683 LOC100506834,GAS1
SE_02_043600241 chr9:86941705-86960635 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 241 3 493 52 4 5 753 GAS1
SE_02_148200174 chr9:86941707-86949715 Sample_02_1482 Bone POE 174 1 191 7 1 0 683 LOC100506834,GAS1
SE_02_028400357 chr9:86941711-86969534 Sample_02_0284 Pelvis patient 119 357 3 729 59 4 28 753 GAS1
SE_01_009100808 chr9:86941804-86950674 Sample_01_0091 Uterus uterus 808 1 215 7 1 0 683 GAS1
SE_01_005100388 chr9:86942034-86948497 Sample_01_0051 Embryo neural-progenitor-cell 388 2 159 6 1 0 585 GAS1
SE_02_148100582 chr9:86942098-86949595 Sample_02_1481 Bone MIC 582 1 179 7 1 0 683 LOC100506834,GAS1
SE_02_055600332 chr9:86942103-86947571 Sample_02_0556 iPSCs BOFS hiPSC cl1 332 2 132 6 1 0 585 GAS1,LOC100506834
SE_02_027600384 chr9:86942139-86949713 Sample_02_0276 Retina FW15 384 2 181 7 1 0 683 GAS1
SE_02_096800161 chr9:86942193-86949515 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 161 2 177 7 1 0 683 LOC100506834,GAS1
SE_02_148500843 chr9:86942297-86949528 Sample_02_1485 Bone SK-ES-1 843 2 172 7 1 0 683 LOC100506834,GAS1
SE_01_010100869 chr9:86942339-86949323 Sample_01_0101 Pancreas pancreas_54y 869 2 168 7 1 0 683 LOC100506834,GAS1
SE_02_061400799 chr9:86942543-86950045 Sample_02_0614 Liposarcoma MLPS_T2 799 2 175 7 1 0 683 LOC100506834,GAS1
SE_01_011200141 chr9:86942589-86947742 Sample_01_0112 Embryonic kidney HEK293_encode 141 3 121 6 1 0 585 GAS1,LOC100506834
SE_02_026200876 chr9:86942635-86949782 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 876 1 161 7 1 0 683 GAS1
SE_02_111400222 chr9:86942754-86947642 Sample_02_1114 Embryonic kidney HEK293 222 3 109 5 1 0 585 GAS1,LOC100506834
SE_02_070200226 chr9:86942826-86947720 Sample_02_0702 Bone David_TC71 226 3 113 5 1 0 585 GAS1,LOC100506834
SE_02_085600264 chr9:86942935-86949324 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 264 1 147 6 1 0 683 LOC100506834,GAS1
SE_02_074800980 chr9:86942972-86949603 Sample_02_0748 Mammary gland HCC1599_WO 980 1 151 6 1 0 683 LOC100506834,GAS1
SE_02_078800258 chr9:86943414-86949174 Sample_02_0788 Brain 3565 258 2 134 5 0 0 679 LOC100506834,GAS1
SE_02_143200644 chr9:86943422-86949140 Sample_02_1432 Bone A673 STAG2 WT 644 2 134 5 0 0 675 LOC100506834,GAS1
SE_02_117600637 chr9:86943607-86949313 Sample_02_1176 Brain GBM04 637 2 133 5 0 0 683 LOC100506834,GAS1
SE_02_117900407 chr9:86944135-86949302 Sample_02_1179 Brain GBM08 407 2 121 5 0 0 683 LOC100506834,GAS1
SE_02_097600470 chr9:86944256-86947730 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 470 1 81 4 0 0 580 GAS1,LOC100506834
SE_02_097800205 chr9:86944295-86949467 Sample_02_0978 Brain 2168_IDH1 205 1 121 5 0 0 674 LOC100506834,GAS1
SE_02_097300399 chr9:86944637-86949215 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 399 1 113 5 0 0 651 LOC100506834,GAS1
SE_02_096200377 chr9:86944685-86949765 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 377 1 120 5 0 0 643 LOC100506834,GAS1
SE_02_143300550 chr9:86944747-86949250 Sample_02_1433 Bone A673 STAG2 null 550 1 113 5 0 0 643 LOC100506834,GAS1
SE_02_098200517 chr9:86944816-86947816 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 517 1 77 4 0 0 539 GAS1,LOC100506834
SE_02_142000400 chr9:86944835-86947701 Sample_02_1420 Brain DIPG007 400 1 76 4 0 0 536 GAS1,LOC100506834
SE_02_120200558 chr9:86944855-86949232 Sample_02_1202 Brain GBM38 558 1 112 5 0 0 632 LOC100506834,GAS1
SE_02_027500546 chr9:86944869-86949458 Sample_02_0275 Retina FW14 546 1 115 5 0 0 632 GAS1
SE_02_001900605 chr9:86944897-86949236 Sample_02_0019 Embryo Neural crest cells 605 1 110 5 0 0 631 GAS1
SE_02_098000309 chr9:86944965-86947641 Sample_02_0980 Brain BT245 309 1 70 4 0 0 532 GAS1,LOC100506834
SE_02_119300806 chr9:86944982-86949337 Sample_02_1193 Brain GBM27 806 1 111 5 0 0 629 LOC100506834,GAS1
SE_02_097400410 chr9:86945008-86947731 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 410 1 73 4 0 0 526 GAS1,LOC100506834
SE_02_095500524 chr9:86945029-86947712 Sample_02_0955 Brain IDH1_2469 524 1 72 4 0 0 525 GAS1,LOC100506834
SE_01_001800260 chr9:86965147-86990771 Sample_01_0018 Submandibular Salivary Gland ACC112 260 4 765 109 5 73 111 GAS1
Genomic distribution of SEs associated with GAS1
Genome Browser

The strength of the tissue affected by the gene

Expression of GAS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)