SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000141736
Gene: ERBB2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:39687914-39730426 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_040400141 chr17:39671896-39707524 Sample_02_0404 Mammary gland ZR-75-1_2 141 4 842 97 10 117 1576 ERBB2,PGAP3,PPP1R1B,STARD3,GRB7,C17ORF37,PNMT,TCAP
SE_02_074300209 chr17:39674703-39706257 Sample_02_0743 Embryo ES derived mesoderm_day2 209 8 745 85 7 101 857 ERBB2,PGAP3,PPP1R1B,GRB7,PNMT,MIR4728,TCAP,STARD3,MIEN1
SE_02_103600891 chr17:39674807-39723656 Sample_02_1036 Mammary gland HCC70_XY018 891 10 1207 105 9 181 2263 ERBB2,PGAP3,PPP1R1B,GRB7,PNMT,MIR4728,TCAP,STARD3,MIEN1
SE_02_067500040 chr17:39674866-39705782 Sample_02_0675 Embryo H1 hESC-derived neural progenitor cells_Smad_0hr 40 12 726 83 6 95 811 ERBB2,PGAP3,PPP1R1B,GRB7,PNMT,MIR4728,TCAP,STARD3,MIEN1
SE_02_116100039 chr17:39678423-39716583 Sample_02_1161 Embryo H1_shZNF587 39 10 909 64 6 164 1863 ERBB2,PGAP3,PPP1R1B,GRB7,PNMT,MIR4728,TCAP,STARD3,MIEN1
SE_02_008000001 chr17:39686414-39713237 Sample_02_0080 Lung Calu-3 1 2 623 38 6 142 1358 ERBB2,PGAP3,STARD3,C17ORF37,GRB7,PNMT,TCAP
SE_02_012500672 chr17:39686950-39706074 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 672 3 442 31 4 99 633 ERBB2,PGAP3,STARD3,C17ORF37,GRB7,PNMT,TCAP
SE_02_075600886 chr17:39687160-39706258 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 886 3 439 31 4 101 633 ERBB2,PGAP3,TCAP,GRB7,PNMT,MIR4728,MIEN1
SE_02_004200413 chr17:39687165-39691127 Sample_02_0042 Embryo endodermal CyT49_ES_D0 413 1 90 7 2 1 211 ERBB2,PGAP3,C17ORF37,GRB7,PNMT,TCAP
SE_02_003600546 chr17:39687187-39691388 Sample_02_0036 Embryo H7 546 1 96 8 2 1 211 ERBB2,PGAP3,C17ORF37,GRB7,PNMT,TCAP
SE_02_157200441 chr17:39687346-39705730 Sample_02_1572 iPSCs FiPSC 441 6 425 29 4 95 633 ERBB2,PGAP3,TCAP,GRB7,PNMT,MIR4728,MIEN1
SE_02_117200185 chr17:39687347-39705835 Sample_02_1172 Embryo H9 WT 185 3 425 29 4 95 633 ERBB2,PGAP3,TCAP,GRB7,PNMT,MIR4728,MIEN1
SE_02_157000309 chr17:39687399-39705727 Sample_02_1570 iPSCs EiPSC 309 5 422 29 4 95 633 ERBB2,PGAP3,TCAP,GRB7,PNMT,MIR4728,MIEN1
SE_02_156700273 chr17:39687411-39705812 Sample_02_1567 iPSCs CiPSC 273 6 423 29 4 95 633 ERBB2,PGAP3,TCAP,GRB7,PNMT,MIR4728,MIEN1
SE_02_067700105 chr17:39689416-39705255 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 105 4 360 25 2 86 422 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_067600144 chr17:39689464-39705149 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 144 7 355 25 2 83 422 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_055800463 chr17:39689610-39705469 Sample_02_0558 iPSCs FX52 iPSCs mock 463 4 366 26 3 90 422 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_00_001900174 chr17:39689922-39706235 Sample_00_0019 Dermal fibroblasts iPS-20b 174 4 379 27 3 98 422 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_067800083 chr17:39690029-39705599 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 83 5 364 26 3 94 422 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_067900195 chr17:39690043-39706631 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 195 10 383 27 3 104 422 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_001700136 chr17:39690075-39707309 Sample_02_0017 Embryo H9_ESC 136 4 397 28 3 116 527 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_116000255 chr17:39690219-39717196 Sample_02_1160 Embryo H1_shLuc 255 9 656 38 5 164 1537 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_00_001200230 chr17:39690247-39706019 Sample_00_0012 Embryo H1-hESC 230 4 370 27 3 97 422 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_077501198 chr17:39693536-39705466 Sample_02_0775 Pancreas EndoC-BH1_SE 1198 6 264 17 2 90 389 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_019300392 chr17:39694105-39708329 Sample_02_0193 Kidney Patient_x750N 392 2 322 20 2 116 545 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_004001291 chr17:39694315-39706434 Sample_02_0040 Embryo PFG 1291 3 274 18 2 101 389 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_098900585 chr17:39694342-39712136 Sample_02_0989 Kidney kidney cortex_WT 585 1 414 21 3 139 1001 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_004800873 chr17:39694366-39704296 Sample_02_0048 Embryo endodermal CyT49_HE 873 3 213 12 1 64 389 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_01_007900713 chr17:39694438-39717602 Sample_01_0079 Peyers patch Peyers-patch 713 3 558 27 4 169 1594 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_074700922 chr17:39694601-39728750 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 922 12 865 38 6 256 2820 ERBB2,MIR4728,TCAP,GRB7,PNMT,PGAP3,IKZF3,MIEN1
SE_02_074501477 chr17:39694643-39706061 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1477 4 259 15 2 98 375 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_00_004900469 chr17:39694684-39707190 Sample_00_0049 Small intestine small intestine 30y 469 6 281 16 2 116 456 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_092100748 chr17:39694694-39724288 Sample_02_0921 Heart embryonic heart_CS22 748 7 751 36 5 191 1925 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_092301059 chr17:39694848-39718347 Sample_02_0923 Heart fetal heart_PCW10_12522 1059 5 571 26 4 169 1560 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_138400664 chr17:39694955-39707079 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 664 4 276 16 2 113 381 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_074600555 chr17:39694963-39728524 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 555 11 857 37 6 255 2723 ERBB2,MIR4728,TCAP,GRB7,PNMT,PGAP3,IKZF3,MIEN1
SE_02_104602392 chr17:39695056-39722462 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2392 10 688 33 4 169 1623 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_047700729 chr17:39695158-39717525 Sample_02_0477 Colon intestinal epithelial organoids_139a 729 6 547 26 4 169 1495 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_041800471 chr17:39695209-39705846 Sample_02_0418 Embryo H9_Null+EZH2 471 2 245 14 2 94 299 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_120100149 chr17:39695209-39720010 Sample_02_1201 Brain GBM37 149 5 621 27 4 169 1601 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_01_010100602 chr17:39695689-39717387 Sample_01_0101 Pancreas pancreas_54y 602 5 533 26 4 160 1429 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_01_009900661 chr17:39695837-39717508 Sample_01_0099 Colon transverse colon 661 4 536 26 4 163 1453 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_020100006 chr17:39696406-39708498 Sample_02_0201 Stomach MKN7 6 3 281 17 2 111 455 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_008600465 chr17:39698155-39710127 Sample_02_0086 Pancreas CAPAN1 465 1 277 15 3 117 709 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_076400103 chr17:39698253-39708003 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 103 1 219 13 2 105 381 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_067100020 chr17:39698589-39709590 Sample_02_0671 Mammary gland breast cancer_DSG 20 1 255 13 1 114 593 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_067000010 chr17:39698671-39708639 Sample_02_0670 Mammary gland breast cancer FA 10 1 231 12 1 112 483 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_01_008000330 chr17:39698881-39717899 Sample_01_0080 Prostate prostate 330 2 467 21 3 158 1477 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_125300667 chr17:39698894-39709145 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 667 1 239 12 1 112 503 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_076800294 chr17:39698989-39706862 Sample_02_0768 Ovary SKOV3 294 1 180 11 1 94 274 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_066400258 chr17:39699069-39716042 Sample_02_0664 Prostate LNCaP_DMSO 258 3 422 21 3 139 1180 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_125800719 chr17:39699093-39710326 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 719 1 264 13 2 119 753 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_074900578 chr17:39699117-39717596 Sample_02_0749 Mammary gland HCC1599_GSI 578 4 459 20 3 158 1469 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_108700422 chr17:39699124-39710279 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 422 3 262 13 2 119 741 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_016800403 chr17:39699131-39717533 Sample_02_0168 Prostate LNCaP 403 2 456 20 3 158 1459 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_140800366 chr17:39699241-39717449 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 366 3 451 20 3 156 1444 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_105100007 chr17:39699252-39710010 Sample_02_1051 Esophagus Eso26 7 1 252 13 2 115 683 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_081900548 chr17:39699262-39717511 Sample_02_0819 Ovary Mucinous ovarian cancer 548 3 453 20 3 158 1455 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_108800595 chr17:39699301-39707649 Sample_02_1088 Mammary gland T47D_shCtrl_45min 595 1 187 10 1 105 381 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_00_001100928 chr17:39699332-39707853 Sample_00_0011 Esophagus esophagus 928 3 193 10 1 105 381 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_00_004100929 chr17:39699382-39707855 Sample_00_0041 Stomach stomach_3y 929 3 193 10 1 105 371 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_01_007100580 chr17:39699441-39707965 Sample_01_0071 Pancreas body-of-pancreas 580 3 193 10 1 105 365 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_140700228 chr17:39699444-39717422 Sample_02_1407 Prostate LNCaP_R1881 4h 228 3 447 19 3 156 1420 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_140900334 chr17:39699455-39717021 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 334 2 436 19 3 152 1349 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_00_004200661 chr17:39699463-39707817 Sample_00_0042 Stomach stomach_30y 661 2 191 10 1 105 365 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_067300283 chr17:39699487-39707269 Sample_02_0673 Prostate LNCAP_FA 283 1 177 9 1 105 350 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_140600220 chr17:39699978-39717476 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 220 4 436 17 3 151 1345 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_016200245 chr17:39701282-39707173 Sample_02_0162 Prostate C4-2B_vehicle_24h 245 2 137 7 1 80 80 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_152500002 chr17:39701953-39717652 Sample_02_1525 Stomach N87 DMSO 2 3 396 17 3 124 1205 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_082700860 chr17:39701979-39705121 Sample_02_0827 Stomach normal gastric 860 3 71 4 0 38 0 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_016300111 chr17:39702114-39717002 Sample_02_0163 Prostate C4-2B_SR2211_24h 111 5 376 17 3 118 1101 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_02_105500210 chr17:39702230-39707702 Sample_02_1055 Esophagus KYAE1 210 1 125 8 1 71 117 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_051100425 chr17:39702239-39707138 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 425 1 114 7 1 70 69 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_050900396 chr17:39702642-39716910 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 396 3 361 16 3 117 1101 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_01_002200221 chr17:39702684-39707330 Sample_01_0022 Prostate C4-2B 221 2 101 6 1 70 109 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_00_005800641 chr17:39702829-39716991 Sample_00_0058 Stomach stomach 34y 641 5 358 16 3 117 1101 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_067401185 chr17:39702984-39717492 Sample_02_0674 Endometrium E1_FA 1185 6 368 15 3 122 1186 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_02_104301740 chr17:39703700-39716525 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1740 8 331 15 3 100 1041 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
SE_00_003000460 chr17:39704671-39707696 Sample_00_0030 Pancreas pancreas 460 4 74 5 1 49 117 ERBB2,C17ORF37,PGAP3,GRB7,PNMT,TCAP
SE_00_005000072 chr17:39705611-39716453 Sample_00_0050 Esophagus esophagus_30y 72 3 278 12 2 65 1021 ERBB2,TCAP,GRB7,PNMT,MIR4728,PGAP3,MIEN1
Genomic distribution of SEs associated with ERBB2
Genome Browser

The strength of the tissue affected by the gene

Expression of ERBB2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)