SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000101210
Gene: EEF1A2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr20:63488013-63499239 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_087200517 chr20:63469911-63503084 Sample_02_0872 Colon HCT116_siCtrl-5FU 517 6 1063 87 4 213 1671 KCNQ2,EEF1A2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_124400079 chr20:63478683-63503858 Sample_02_1244 Brain KCNR_ATRA 79 9 847 71 3 139 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_092500823 chr20:63482255-63502967 Sample_02_0925 Heart fetal heart_PCW17_12570 823 4 679 60 2 137 1402 EEF1A2,KCNQ2,SRMS,PTK6,PPDPF
SE_02_114200325 chr20:63482275-63503284 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 325 4 697 62 2 137 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_01_009800616 chr20:63482337-63509883 Sample_01_0098 Heart left ventricle_51y 616 8 955 118 2 137 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_092100718 chr20:63482628-63504267 Sample_02_0921 Heart embryonic heart_CS22 718 3 720 72 2 136 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_092201111 chr20:63482660-63504194 Sample_02_0922 Heart fetal heart_PCW10_12434 1111 5 712 69 2 135 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_133300169 chr20:63482712-63502568 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 169 6 649 60 2 135 1402 EEF1A2,KCNQ2,SRMS,PTK6,PPDPF
SE_02_133400161 chr20:63482714-63502757 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 161 5 652 60 2 135 1402 EEF1A2,KCNQ2,SRMS,PTK6,PPDPF
SE_00_004600620 chr20:63482726-63509574 Sample_00_0046 Heart right ventricle_34y 620 13 926 117 2 135 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195,HELZ2
SE_02_077600557 chr20:63482816-63524992 Sample_02_0776 Pancreas EndoC-BH1 557 7 1481 178 3 152 1891 PPDPF,EEF1A2,KCNQ2,SRMS,PTK6,C20ORF195,HELZ2
SE_02_092400822 chr20:63482857-63503868 Sample_02_0924 Heart fetal heart_PCW10_12569 822 5 697 66 2 135 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_092300868 chr20:63482889-63504077 Sample_02_0923 Heart fetal heart_PCW10_12522 868 5 701 68 2 135 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_090401535 chr20:63482939-63509596 Sample_02_0904 Heart left ventricle_DCM_LV1028 1535 7 920 117 2 135 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_00_005700427 chr20:63483163-63502661 Sample_00_0057 Heart right ventricle 3y 427 9 631 60 2 135 1402 EEF1A2,KCNQ2,SRMS,PTK6,PPDPF,HELZ2
SE_02_054100143 chr20:63483192-63503948 Sample_02_0541 Brain Kelly_NaiveJQ1 143 4 680 68 2 135 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_074700728 chr20:63483317-63503799 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 728 7 668 65 2 135 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_046200091 chr20:63483383-63509086 Sample_02_0462 Lung NCI-H2171 cells 91 8 889 115 2 135 1402 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_133500329 chr20:63483390-63499189 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 329 3 516 47 2 112 1291 EEF1A2,KCNQ2,SRMS,PTK6,PPDPF
SE_02_021600983 chr20:63487345-63506769 Sample_02_0216 Skin NHEK_scramble 983 5 663 87 2 130 1402 EEF1A2,PTK6,PPDPF,C20ORF195,SRMS,KCNQ2
SE_02_036700441 chr20:63493640-63510115 Sample_02_0367 Skeletal muscle NS129 441 3 617 92 2 76 731 EEF1A2,PTK6,PPDPF,C20ORF195,SRMS,KCNQ2
SE_01_009700654 chr20:63494210-63510139 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 654 5 599 90 2 74 731 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_036800395 chr20:63494294-63510217 Sample_02_0368 Skeletal muscle NS134 395 5 599 92 2 74 731 EEF1A2,PTK6,PPDPF,C20ORF195,SRMS,KCNQ2
SE_02_025300291 chr20:63495713-63504497 Sample_02_0253 Brain BE2C_DMSO 291 1 308 39 1 60 532 EEF1A2,PTK6,PPDPF,C20ORF195,SRMS,KCNQ2
SE_02_054300089 chr20:63495797-63504689 Sample_02_0543 Brain Kelly_vehicle 89 2 318 40 1 59 505 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_055500958 chr20:63495940-63500087 Sample_02_0555 Other HAP1_WT 958 1 143 13 1 37 475 EEF1A2,KCNQ2,SRMS,PTK6,PPDPF
SE_02_042100530 chr20:63496042-63504417 Sample_02_0421 Brain BE2C_3 530 1 296 37 1 50 452 EEF1A2,PTK6,PPDPF,C20ORF195,SRMS,KCNQ2
SE_02_007500171 chr20:63496109-63504150 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 171 2 280 33 1 50 437 EEF1A2,PTK6,PPDPF,C20ORF195,SRMS,KCNQ2
SE_00_003200467 chr20:63496147-63503022 Sample_00_0032 Psoas muscle psoas-muscle_30y 467 1 237 24 1 50 430 EEF1A2,PTK6,PPDPF,C20ORF195,SRMS,KCNQ2
SE_00_005201144 chr20:63496420-63509516 Sample_00_0052 Heart left ventricle 3y 1144 4 482 79 0 50 403 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_150000320 chr20:63496508-63504325 Sample_02_1500 Brain KELLY_untreat 320 3 269 34 0 50 403 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
SE_02_077500133 chr20:63497256-63504849 Sample_02_0775 Pancreas EndoC-BH1_SE 133 1 264 36 0 44 403 EEF1A2,KCNQ2,SRMS,PPDPF,PTK6,C20ORF195
Genomic distribution of SEs associated with EEF1A2
Genome Browser

The strength of the tissue affected by the gene

Expression of EEF1A2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)