SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000114346
Gene: ECT2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr3:172750682-172821474 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_052200285 chr3:172743051-172753874 Sample_02_0522 Colon SW620 285 4 293 32 0 26 189 ECT2,NCEH1
SE_02_048100872 chr3:172744828-172767143 Sample_02_0481 Mammary gland MDA-MB231 872 5 589 50 1 60 452 ECT2,NCEH1
SE_02_008600989 chr3:172745292-172753594 Sample_02_0086 Pancreas CAPAN1 989 1 209 22 0 26 189 NCEH1,ECT2
SE_02_111101178 chr3:172745541-172767943 Sample_02_1111 Other HGrC1_SMAD2/3KO 1178 10 595 49 1 60 452 ECT2,NCEH1
SE_02_087800613 chr3:172745631-172755659 Sample_02_0878 Ovary SVOG3e cells_noDox_control 613 4 249 22 0 34 252 ECT2,NCEH1
SE_02_017200857 chr3:172745640-172756419 Sample_02_0172 Lung IMR-90_quiescent 857 1 269 25 0 34 254 ECT2,NCEH1
SE_02_099000528 chr3:172745744-172753657 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 528 2 192 20 0 26 189 ECT2,NCEH1
SE_02_099200655 chr3:172745793-172754441 Sample_02_0992 Mammary gland MDA-MB-231_Par 655 3 211 21 0 26 197 ECT2,NCEH1
SE_02_042800963 chr3:172745804-172761053 Sample_02_0428 Kidney 12364284_VHL- 963 3 395 35 1 43 335 ECT2,NCEH1
SE_02_113700821 chr3:172745811-172753488 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 821 2 181 18 0 25 189 ECT2,NCEH1
SE_02_125800433 chr3:172745820-172754223 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 433 4 204 21 0 26 189 ECT2,NCEH1
SE_02_113800828 chr3:172745830-172754222 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 828 1 204 21 0 26 189 ECT2,NCEH1
SE_02_088200831 chr3:172745924-172751686 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 831 2 136 15 0 22 109 ECT2,NCEH1
SE_02_122800400 chr3:172745928-172755187 Sample_02_1228 Mammary gland MDA-MB-231_2 400 6 226 22 0 27 223 ECT2,NCEH1
SE_02_126401165 chr3:172745934-172752211 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1165 3 145 16 0 22 128 ECT2,NCEH1
SE_02_087900646 chr3:172745953-172754225 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 646 2 203 21 0 26 189 ECT2,NCEH1
SE_02_138100440 chr3:172745965-172758200 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 440 7 309 25 0 41 284 ECT2,NCEH1
SE_02_151501001 chr3:172745969-172754634 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 1001 4 212 21 0 27 209 ECT2,NCEH1
SE_02_015100568 chr3:172745984-172755926 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 568 1 245 25 0 34 254 ECT2,NCEH1
SE_02_088100603 chr3:172745986-172752551 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 603 2 157 17 0 22 178 ECT2,NCEH1
SE_02_045100843 chr3:172745991-172752601 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 843 2 160 17 0 22 185 ECT2,NCEH1
SE_02_088300989 chr3:172746002-172752138 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 989 2 145 16 0 22 122 ECT2,NCEH1
SE_02_126300930 chr3:172746027-172752095 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 930 2 143 15 0 22 117 ECT2,NCEH1
SE_02_088000506 chr3:172746034-172752384 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 506 2 149 16 0 22 156 ECT2,NCEH1
SE_02_142800946 chr3:172746043-172755364 Sample_02_1428 Shoulder fibroblast_316 946 2 230 21 0 28 231 ECT2,NCEH1
SE_02_156600592 chr3:172746059-172753026 Sample_02_1566 Dermal Dermal fibroblast 592 2 166 16 0 22 189 ECT2,NCEH1
SE_02_152300356 chr3:172746188-172754914 Sample_02_1523 Lung A549 DMSO 356 4 214 19 0 27 219 ECT2,NCEH1
SE_02_061001272 chr3:172746193-172752537 Sample_02_0610 Liposarcoma MLS 1765-92 1272 3 153 15 0 22 178 ECT2,NCEH1
SE_02_071301293 chr3:172746256-172750486 Sample_02_0713 Pancreas BxPC3_sgTP63 1293 2 92 9 0 8 0 ECT2,NCEH1
SE_02_113901069 chr3:172746291-172754496 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 1069 2 201 18 0 26 201 ECT2,NCEH1
SE_02_076900995 chr3:172746326-172755022 Sample_02_0769 Ovary HEYA8 995 8 212 19 0 27 219 ECT2,NCEH1
SE_02_071700183 chr3:172746350-172754903 Sample_02_0717 Pancreas HPAFII_GFP_DOX 183 4 208 18 0 27 219 ECT2,NCEH1
SE_02_071800146 chr3:172746378-172752733 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 146 3 149 14 0 22 189 ECT2,NCEH1
SE_02_138300429 chr3:172746378-172759610 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 429 9 334 27 1 41 308 ECT2,NCEH1
SE_02_127300762 chr3:172746387-172755238 Sample_02_1273 Cervix HeLa 762 4 215 19 0 27 226 ECT2,NCEH1
SE_02_070500427 chr3:172746466-172752711 Sample_02_0705 Pancreas AsPC1 WT 427 3 147 14 0 22 189 ECT2,NCEH1
SE_02_072100253 chr3:172746480-172754830 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 253 5 203 18 0 27 217 ECT2,NCEH1
SE_02_071200829 chr3:172746512-172750519 Sample_02_0712 Pancreas BxPC3_sgNEG 829 2 83 9 0 12 0 ECT2,NCEH1
SE_02_105400944 chr3:172746807-172750503 Sample_02_1054 Esophagus SKGT4 944 3 79 9 0 9 0 ECT2,NCEH1
SE_02_070300225 chr3:172747187-172752860 Sample_02_0703 Pancreas PATU8988S WT 225 1 139 13 0 22 189 ECT2,NCEH1
SE_02_138200465 chr3:172747194-172784337 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 465 15 956 92 1 81 561 ECT2,NCEH1
SE_02_137000327 chr3:172747218-172755015 Sample_02_1370 Pancreas Patu8902-untreated 327 5 192 18 0 27 219 ECT2,NCEH1
SE_02_142500756 chr3:172747240-172750524 Sample_02_1425 Shoulder fibroblast_384 756 3 70 8 0 12 0 ECT2,NCEH1
SE_02_045200990 chr3:172747314-172766598 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 990 5 510 42 1 60 452 ECT2,NCEH1
SE_02_076000753 chr3:172747355-172754964 Sample_02_0760 Ovary BIN-67_SMARCA4 753 2 185 17 0 27 219 ECT2,NCEH1
SE_02_093900556 chr3:172747385-172752151 Sample_02_0939 Mammary gland MDA-MB-231_control 556 3 111 11 0 22 122 ECT2,NCEH1
SE_02_071600196 chr3:172747400-172754870 Sample_02_0716 Pancreas SUIT2_GFP 196 4 184 16 0 27 219 ECT2,NCEH1
SE_01_003600287 chr3:172747506-172752397 Sample_01_0036 Cervix HeLa-S3 287 1 113 11 0 22 159 NCEH1,ECT2
SE_02_041500132 chr3:172747672-172752706 Sample_02_0415 Stomach YCC22 132 4 122 11 0 22 189 NCEH1,ECT2
SE_02_002100501 chr3:172747703-172752206 Sample_02_0021 Colon V429 501 1 103 10 0 22 128 NCEH1,ECT2
SE_02_019600243 chr3:172747869-172751603 Sample_02_0196 Stomach NCC59 243 2 87 8 0 22 109 NCEH1,ECT2
SE_02_047500794 chr3:172747879-172751865 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 794 1 94 10 0 22 109 ECT2,NCEH1
SE_02_152500364 chr3:172747928-172755564 Sample_02_1525 Stomach N87 DMSO 364 5 191 16 0 32 244 ECT2,NCEH1
SE_02_136800305 chr3:172747944-172752862 Sample_02_1368 Pancreas MIA PaCa-2-untreated 305 2 118 11 0 22 189 ECT2,NCEH1
SE_02_023600639 chr3:172747950-172751787 Sample_02_0236 Colon V206 639 2 89 9 0 22 109 NCEH1,ECT2
SE_02_072200443 chr3:172747962-172750466 Sample_02_0722 Pancreas PATU8988S_TP63dN_DOX 443 1 50 6 0 5 0 ECT2,NCEH1
SE_02_071400144 chr3:172747976-172753637 Sample_02_0714 Pancreas SUIT2_MTV 144 3 137 14 0 26 189 ECT2,NCEH1
SE_02_126700970 chr3:172748005-172752029 Sample_02_1267 Bone Im-GCT-4072_G34W 970 1 92 10 0 22 112 ECT2,NCEH1
SE_02_070700559 chr3:172748062-172750450 Sample_02_0707 Pancreas BxPC3 WT 559 1 48 6 0 5 0 ECT2,NCEH1
SE_01_001901005 chr3:172748072-172752087 Sample_01_0019 Brain and spinal cord astrocyte 1005 1 92 10 0 22 116 NCEH1,ECT2
SE_02_071500284 chr3:172748082-172752993 Sample_02_0715 Pancreas SUIT2_TP63dN 284 2 117 11 0 22 189 ECT2,NCEH1
SE_01_004500584 chr3:172748089-172752253 Sample_01_0045 Mammary gland mammary-epithelial-cell 584 1 93 9 0 22 134 NCEH1,ECT2
SE_02_010800648 chr3:172748292-172752453 Sample_02_0108 Fallopian tube FT246 648 1 97 10 0 19 170 NCEH1,ECT2
SE_02_083900814 chr3:172748334-172766107 Sample_02_0839 Embryo hNPCs_K755R/+ 814 3 473 39 1 55 452 ECT2,NCEH1
SE_02_071900532 chr3:172748362-172755293 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 532 2 173 15 0 22 228 ECT2,NCEH1
SE_02_019100200 chr3:172748401-172751624 Sample_02_0191 Stomach SNU719 200 3 75 7 0 17 109 NCEH1,ECT2
SE_02_058400784 chr3:172748407-172766370 Sample_02_0584 Lung H1299 WT 784 5 476 39 1 55 452 ECT2,NCEH1
SE_02_020400354 chr3:172748471-172752220 Sample_02_0204 Stomach IM95 354 3 86 8 0 17 128 NCEH1,ECT2
SE_02_018600147 chr3:172748509-172751439 Sample_02_0186 Stomach AGS 147 3 70 5 0 16 109 NCEH1,ECT2
SE_02_126200607 chr3:172748533-172751852 Sample_02_1262 Bone Im-GCT-3504_G34W 607 1 80 8 0 17 109 ECT2,NCEH1
SE_02_145200817 chr3:172748544-172752072 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 817 1 83 8 0 17 116 ECT2,NCEH1
SE_02_066600514 chr3:172748601-172751739 Sample_02_0666 Prostate RWPE1 Lacz rep1 514 1 75 7 0 17 109 ECT2,NCEH1
SE_02_068700131 chr3:172835693-172871206 Sample_02_0687 Lung NCI-H146_no infection 131 12 873 25 1 142 0 ECT2
SE_02_105800320 chr3:172836690-172877325 Sample_02_1058 Bone A673_SA2 Rescue 320 17 1033 25 2 176 0 ECT2
SE_02_139000585 chr3:172840898-172860327 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 585 3 447 18 1 106 0 ECT2
SE_02_152100969 chr3:172842895-172860049 Sample_02_1521 Skin A375 DMSO 969 5 394 14 1 99 0 ECT2
SE_02_077100478 chr3:172845694-172876421 Sample_02_0771 Ovary OVCA429_shGRHL2 478 15 801 10 1 136 0 ECT2
SE_02_001800446 chr3:172852323-172856272 Sample_02_0018 Embryo NEC 446 1 97 4 1 41 0 ECT2
SE_02_155301000 chr3:172856397-172916425 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1000 17 1646 1 1 218 121 SPATA16,ECT2
SE_02_062900682 chr3:172867695-172887824 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 682 6 535 0 1 78 0 ECT2
SE_02_068700306 chr3:172912761-172926802 Sample_02_0687 Lung NCI-H146_no infection 306 3 325 0 0 108 178 SPATA16,ECT2
SE_02_049400306 chr3:172913871-172922909 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 306 4 201 0 0 68 67 SPATA16,ECT2
SE_02_049501004 chr3:172914879-172920506 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 1004 3 124 0 0 58 64 SPATA16,ECT2
Genomic distribution of SEs associated with ECT2
Genome Browser

The strength of the tissue affected by the gene

Expression of ECT2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)