SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000120306
Gene: CYSTM1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:140175156-140282052 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_098900148 chr5:140145631-140263419 Sample_02_0989 Kidney kidney cortex_WT 148 27 2465 285 2 329 1606 CYSTM1,PFDN1,LOC101929719,PURA,LINC01024,IGIP
SE_02_088400222 chr5:140145658-140191069 Sample_02_0884 Colon LoVo 222 8 958 112 1 169 1042 CYSTM1,LOC101929719,LINC01024,PURA,IGIP
SE_02_081900036 chr5:140150943-140262592 Sample_02_0819 Ovary Mucinous ovarian cancer 36 35 2355 277 2 316 1606 CYSTM1,PFDN1,LOC101929719,PURA,LINC01024,IGIP
SE_02_125800186 chr5:140161434-140222992 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 186 12 1253 154 2 203 1136 CYSTM1,LOC101929719,PURA,IGIP
SE_02_070300098 chr5:140161992-140193912 Sample_02_0703 Pancreas PATU8988S WT 98 6 654 90 1 133 1010 CYSTM1,LOC101929719,PURA,IGIP
SE_02_071301339 chr5:140162061-140177896 Sample_02_0713 Pancreas BxPC3_sgTP63 1339 10 339 36 1 67 998 CYSTM1,LOC101929719,PURA,IGIP
SE_02_071800077 chr5:140162096-140191290 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 77 8 611 83 1 122 993 CYSTM1,LOC101929719,PURA,IGIP
SE_02_136600592 chr5:140162272-140177712 Sample_02_1366 Pancreas BxPC3-untreated 592 5 328 34 1 67 963 CYSTM1,LOC101929719,PURA,IGIP
SE_02_070700827 chr5:140162414-140177807 Sample_02_0707 Pancreas BxPC3 WT 827 10 328 35 1 67 945 CYSTM1,LOC101929719,PURA,IGIP
SE_02_072200087 chr5:140162433-140190839 Sample_02_0722 Pancreas PATU8988S_TP63dN_DOX 87 11 601 81 1 118 941 CYSTM1,LOC101929719,PURA,IGIP
SE_01_010100459 chr5:140162882-140222725 Sample_01_0101 Pancreas pancreas_54y 459 15 1217 147 2 203 969 CYSTM1,LOC101929719,PURA,IGIP
SE_02_137100297 chr5:140163622-140183301 Sample_02_1371 Pancreas Patu899S-untreated 297 9 416 48 1 105 775 CYSTM1,LOC101929719,PURA,IGIP
SE_02_071100145 chr5:140164185-140196918 Sample_02_0711 Pancreas hN35_organoid 145 19 652 90 1 150 822 CYSTM1,LOC101929719,IGIP
SE_02_047800976 chr5:140164322-140183571 Sample_02_0478 Colon normal colon mucosa 976 8 399 47 1 108 713 CYSTM1,LOC101929719,IGIP
SE_02_047701190 chr5:140164337-140183699 Sample_02_0477 Colon intestinal epithelial organoids_139a 1190 4 399 49 1 108 713 CYSTM1,LOC101929719,IGIP
SE_02_071000180 chr5:140164406-140193510 Sample_02_0710 Pancreas hN34_organoid 180 8 579 81 1 130 703 CYSTM1,LOC101929719,IGIP
SE_00_005800002 chr5:140164602-140262216 Sample_00_0058 Stomach stomach 34y 2 43 2026 244 2 277 1249 CYSTM1,PFDN1,LOC101929719,IGIP
SE_01_009900702 chr5:140164842-140183393 Sample_01_0099 Colon transverse colon 702 6 387 46 1 105 660 CYSTM1,LOC101929719,IGIP
SE_02_130500592 chr5:140164910-140178321 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 592 3 275 27 1 78 653 CYSTM1,LOC101929719,IGIP
SE_02_070500660 chr5:140164978-140190447 Sample_02_0705 Pancreas AsPC1 WT 660 5 526 71 1 118 650 CYSTM1,LOC101929719,IGIP
SE_02_046501133 chr5:140165197-140183688 Sample_02_0465 Adipose subcutaneous adipocytes 1133 11 383 46 1 108 632 CYSTM1,LOC101929719,IGIP
SE_04_000101152 chr5:140165229-140191613 Sample_04_0001 Blood heat shocked K562 1152 5 535 74 1 123 630 CYSTM1,LOC101929719,IGIP
SE_00_004900431 chr5:140165344-140196281 Sample_00_0049 Small intestine small intestine 30y 431 9 620 85 1 150 701 CYSTM1,LOC101929719,IGIP
SE_02_136500335 chr5:140165433-140183312 Sample_02_1365 Pancreas AsPC1-untreated 335 4 374 44 1 105 593 CYSTM1,LOC101929719,IGIP
SE_02_087500992 chr5:140165818-140207454 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 992 16 842 106 0 161 633 CYSTM1,LOC101929719,IGIP
SE_02_098801097 chr5:140167618-140184958 Sample_02_0988 Blood K562_EPZ 1097 7 356 43 0 93 289 CYSTM1,LOC101929719,IGIP
SE_04_000200677 chr5:140167853-140192159 Sample_04_0002 Blood cold shocked K562 677 5 488 69 0 108 254 CYSTM1,LOC101929719,IGIP
SE_02_109900919 chr5:140168086-140187540 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 919 10 409 51 0 92 244 CYSTM1,LOC101929719,IGIP
SE_02_149201094 chr5:140168471-140206055 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1094 8 758 97 0 143 338 CYSTM1,LOC101929719,IGIP
SE_02_103300795 chr5:140169431-140191534 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 795 3 452 62 0 100 244 CYSTM1,LOC101929719,IGIP
SE_02_113000832 chr5:140169793-140190396 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 832 6 430 59 0 94 244 CYSTM1,LOC101929719,IGIP
SE_02_047500620 chr5:140171833-140181505 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 620 4 206 26 0 60 244 CYSTM1,LOC101929719,IGIP
SE_02_092800436 chr5:140172642-140215229 Sample_02_0928 Peripheral blood neutrophils_Ecoli 436 10 859 105 1 142 326 CYSTM1,LOC101929719,IGIP
SE_02_122900562 chr5:140172668-140228788 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 562 19 1117 141 1 181 325 CYSTM1,LOC101929719,IGIP
SE_01_009400704 chr5:140173957-140193408 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 704 1 386 60 0 96 148 CYSTM1,LOC101929719,IGIP
SE_02_081601788 chr5:140174450-140183556 Sample_02_0816 Ovary Clear cell ovarian cancer 1788 6 200 25 0 73 148 CYSTM1,LOC101929719,IGIP
SE_02_125500302 chr5:140174491-140193876 Sample_02_1255 Bladder Bladder tumor Luminal2 302 3 390 60 0 97 148 CYSTM1,LOC101929719,IGIP
SE_02_054501126 chr5:140175150-140191273 Sample_02_0545 Bone marrow K562 WT 1126 6 326 53 0 75 86 CYSTM1,LOC101929719,IGIP
SE_02_150201061 chr5:140175177-140203605 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 1061 5 573 82 0 105 176 CYSTM1,LOC101929719,IGIP
SE_02_090500089 chr5:140177070-140299013 Sample_02_0905 Heart left ventricle_DCM_LV1033 89 31 2587 294 1 313 728 CYSTM1,PFDN1,LOC101929719,HBEGF
SE_02_076000955 chr5:140177108-140222872 Sample_02_0760 Ovary BIN-67_SMARCA4 955 11 917 118 1 139 94 CYSTM1,LOC101929719
SE_02_091700253 chr5:140177270-140273907 Sample_02_0917 Heart left ventricle_DCM_LV1433 253 29 2042 248 1 231 564 CYSTM1,PFDN1,LOC101929719
SE_02_089800313 chr5:140177293-140273727 Sample_02_0898 Heart left ventricle_LV1356 313 27 2033 247 1 230 564 CYSTM1,PFDN1,LOC101929719
SE_02_142901109 chr5:140177394-140223308 Sample_02_1429 Blood GM12878_WT 1109 10 922 119 1 141 94 CYSTM1,LOC101929719
SE_02_158400887 chr5:140177461-140226102 Sample_02_1584 Brain U87 GBM_Mock 887 9 978 125 1 143 94 CYSTM1,LOC101929719
SE_02_093801336 chr5:140204769-140222836 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1336 3 355 37 1 44 0 CYSTM1,LOC101929719
SE_01_009800886 chr5:140205094-140247211 Sample_01_0098 Heart left ventricle_51y 886 10 872 113 1 78 452 CYSTM1,PFDN1,LOC101929719
SE_02_089601215 chr5:140205132-140247543 Sample_02_0896 Heart left ventricle_LV1294 1215 13 884 113 1 78 470 CYSTM1,PFDN1,LOC101929719
SE_02_088700573 chr5:140205197-140268263 Sample_02_0887 Heart left ventricle_LV1121 573 15 1346 149 1 129 470 CYSTM1,PFDN1,LOC101929719
SE_02_090900851 chr5:140205799-140247282 Sample_02_0909 Heart left ventricle_DCM_LV1264 851 12 863 112 1 78 464 CYSTM1,PFDN1,LOC101929719
SE_02_091900941 chr5:140205897-140247651 Sample_02_0919 Heart left ventricle_DCM_LV1532 941 10 875 112 1 78 470 CYSTM1,PFDN1,LOC101929719
SE_04_000100600 chr5:140206101-140226104 Sample_04_0001 Blood heat shocked K562 600 3 396 42 1 46 0 CYSTM1,LOC101929719
SE_01_009400919 chr5:140213448-140226468 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 919 1 246 30 1 43 0 CYSTM1
SE_02_113000598 chr5:140214591-140241916 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 598 8 554 81 0 60 0 CYSTM1
SE_02_071000652 chr5:140215906-140223570 Sample_02_0710 Pancreas hN34_organoid 652 6 150 19 0 31 0 CYSTM1
SE_00_004900369 chr5:140216292-140242337 Sample_00_0049 Small intestine small intestine 30y 369 17 529 75 0 51 0 CYSTM1
SE_02_142300473 chr5:140216715-140223889 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 473 4 136 14 0 31 0 CYSTM1
SE_02_089001061 chr5:140219005-140247116 Sample_02_0890 Heart left ventricle_LV1200 1061 7 598 83 0 58 448 CYSTM1,PFDN1
SE_00_004601016 chr5:140219143-140246574 Sample_00_0046 Heart right ventricle_34y 1016 12 589 82 0 55 369 CYSTM1,PFDN1
Genomic distribution of SEs associated with CYSTM1
Genome Browser

The strength of the tissue affected by the gene

Expression of CYSTM1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)