SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000156234
Gene: CXCL13 Gene type: protein_coding
Strand: + External links:
Genomic region: chr4:77511753-77611834 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_101700990 chr4:77329235-77346977 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 990 5 723 2 2 0 0 CXCL13,CCNG2
SE_02_101600994 chr4:77329693-77345602 Sample_02_1016 Embryo H9_Mesendoderm_24h 994 4 647 1 1 0 0 CXCL13,CCNG2
SE_02_064500978 chr4:77332163-77345320 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 978 4 546 1 1 0 0 CXCL13,CCNG2
SE_02_064600540 chr4:77332180-77344932 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 540 3 533 1 1 0 0 CXCL13,CCNG2
SE_02_065800191 chr4:77333564-77344834 Sample_02_0658 Tracheobronchial epithelial HTBE_H5N1_18h 191 3 486 1 1 0 0 CXCL13
SE_02_048000900 chr4:77335551-77350559 Sample_02_0480 Gingival epithelial HGEP 900 4 616 11 1 0 0 CXCL13,CCNG2
SE_02_107300770 chr4:77335638-77355787 Sample_02_1073 Keratinocyte keratinocytes stem cell 770 5 798 24 3 0 0 CXCL13,CCNG2
SE_01_005400152 chr4:77472675-77507135 Sample_01_0054 Haematopoietic and lymphoid tissue OCI-LY3 152 4 1042 27 3 45 0 CXCL13
SE_02_032501184 chr4:77559598-77567695 Sample_02_0325 Liver hepatocytes_d1 1184 2 306 4 0 35 0 CXCL13,CNOT6L
SE_02_013200712 chr4:77577924-77615194 Sample_02_0132 Lung 1015_CL 712 6 1051 11 2 70 204 CXCL13,CNOT6L
SE_01_005400045 chr4:77578250-77614076 Sample_01_0054 Haematopoietic and lymphoid tissue OCI-LY3 45 2 1005 10 2 70 204 CXCL13
SE_02_064800199 chr4:77578470-77603452 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 199 19 673 7 1 46 0 CXCL13,CNOT6L
SE_02_082601197 chr4:77578558-77613847 Sample_02_0826 Stomach gastric tumor 1197 18 991 10 2 70 204 CXCL13,CNOT6L
SE_02_064701090 chr4:77578909-77603217 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1090 9 659 7 1 46 0 CXCL13,CNOT6L
SE_02_065200901 chr4:77578988-77603380 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 901 8 659 6 1 46 0 CXCL13,CNOT6L
SE_02_064900227 chr4:77579052-77603270 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 227 11 655 6 1 46 0 CXCL13,CNOT6L
SE_02_064400989 chr4:77579053-77602306 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 989 8 616 6 1 45 0 CXCL13,CNOT6L
SE_02_065700431 chr4:77579726-77588584 Sample_02_0657 Tracheobronchial epithelial HTBE_H1N1_06h 431 3 233 3 0 20 0 CXCL13,CNOT6L
Genomic distribution of SEs associated with CXCL13
Genome Browser

The strength of the tissue affected by the gene

Expression of CXCL13

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)