SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000153015
Gene: CWC27 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:64768930-65018750 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_011001107 chr5:64787835-64840930 Sample_02_0110 Ovaries IOE11 1107 7 1286 128 6 116 207 CWC27,SREK1IP1
SE_02_047401528 chr5:64787961-64840258 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1528 14 1281 128 6 116 207 CWC27,SREK1IP1
SE_02_155400849 chr5:64996798-65038404 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 849 9 1017 65 8 142 80 CWC27
SE_02_086500086 chr5:64997624-65042413 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 86 7 1102 67 8 180 80 CWC27
SE_02_086600094 chr5:64998520-65042500 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 94 9 1080 65 7 178 80 CWC27
SE_02_045100223 chr5:65005249-65043572 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 223 10 975 61 7 178 80 CWC27
SE_02_086700274 chr5:65005445-65076791 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 274 26 1836 139 12 328 80 CWC27
SE_02_011000447 chr5:65005693-65043160 Sample_02_0110 Ovaries IOE11 447 5 951 61 7 178 80 CWC27
SE_00_005300176 chr5:65007172-65043023 Sample_00_0053 Embryo trophoblast cell originated from H1 176 16 907 59 6 173 80 CWC27
SE_02_086200101 chr5:65009009-65042685 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 101 7 836 57 6 171 80 CWC27
SE_02_086400096 chr5:65009042-65041746 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 96 8 812 55 6 170 80 CWC27
SE_02_086300095 chr5:65009598-65042064 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 95 3 809 56 6 170 80 CWC27
SE_02_041100224 chr5:65009817-65042635 Sample_02_0411 Liver TTC549_untreated 224 5 821 56 6 170 80 CWC27
SE_02_041200323 chr5:65010462-65038983 Sample_02_0412 Liver TTC549_Doxycycline 323 4 708 53 6 147 80 CWC27
SE_02_010700051 chr5:65011155-65077427 Sample_02_0107 Endometrium EEC16 51 5 1703 133 11 312 80 CWC27
SE_02_027400178 chr5:65011385-65042789 Sample_02_0274 Endometriosis hTERT_KD 178 6 788 54 5 162 80 CWC27
SE_02_135600234 chr5:65011427-65042316 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 234 7 770 53 5 162 80 CWC27
SE_02_008900236 chr5:65011659-65041347 Sample_02_0089 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_3 236 8 740 51 5 155 80 CWC27
SE_02_011100082 chr5:65011877-65076943 Sample_02_0111 Ovaries IOE4 82 7 1673 131 10 311 80 CWC27
SE_02_009300175 chr5:65011902-65038562 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 175 4 670 50 5 133 80 CWC27
SE_02_156600150 chr5:65012124-65076563 Sample_02_1566 Dermal Dermal fibroblast 150 19 1659 131 10 310 80 CWC27
SE_02_137800213 chr5:65012133-65043014 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 213 14 787 53 5 161 80 CWC27
SE_02_047400209 chr5:65012157-65042477 Sample_02_0474 Fibroblast umbilical cord Fibroblast 209 15 763 52 5 161 80 CWC27
SE_02_135500474 chr5:65012221-65042581 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 474 6 764 52 5 161 80 CWC27
SE_02_137700232 chr5:65012246-65043454 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 232 20 790 53 5 161 80 CWC27
SE_02_143801398 chr5:65012247-65042426 Sample_02_1438 Liver LSEC 1398 13 759 52 5 161 80 CWC27
SE_02_143601366 chr5:65012296-65043776 Sample_02_1436 Liver LSEC-Ctrl 1366 10 802 53 5 161 80 CWC27
SE_02_127900971 chr5:65012432-65043233 Sample_02_1279 Bone Mesenchymal stem cells 971 7 784 53 5 161 80 CWC27
SE_02_113300780 chr5:65012808-65042575 Sample_02_1133 Liver Hepatic stellate cells 780 11 748 52 5 156 80 CWC27
SE_02_156800183 chr5:65012826-65042988 Sample_02_1568 Heart Cardiac progenitor cells 183 5 765 53 5 156 80 CWC27
SE_02_088601746 chr5:65012907-65042618 Sample_02_0886 Skin foreskin_ p63KLF4 1746 9 749 52 5 156 80 CWC27
SE_02_157100778 chr5:65013507-65043000 Sample_02_1571 Fibroblast Fibroblast cells 778 5 755 53 5 155 80 CWC27
SE_02_137400236 chr5:65014946-65042479 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 236 15 711 49 5 127 80 CWC27
SE_02_109700151 chr5:65016828-65072419 Sample_02_1097 Haematopoietic and lymphoid tissue 697 151 30 1437 110 6 207 80 CWC27
SE_02_077502066 chr5:65017059-65046274 Sample_02_0775 Pancreas EndoC-BH1_SE 2066 5 763 46 2 122 80 CWC27
SE_02_086900458 chr5:65019231-65063362 Sample_02_0869 Fibroblast VH10_NO_UV 458 15 1151 88 5 138 0 CWC27
SE_02_078400051 chr5:65020093-65076396 Sample_02_0784 Blood OSU-CLL 51 10 1470 113 6 249 0 CWC27
SE_02_022900116 chr5:65020337-65041526 Sample_02_0229 Umbilical cord ID01 116 11 547 32 1 96 0 CWC27
SE_02_138000306 chr5:65020356-65042401 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 306 11 572 33 1 101 0 CWC27
SE_02_078200284 chr5:65020424-65072461 Sample_02_0782 Blood MEC1 284 11 1347 102 5 192 0 CWC27
SE_02_012000028 chr5:65020906-65076829 Sample_02_0120 Haematopoietic and lymphoid tissue REC-1 28 6 1465 110 6 251 0 CWC27
SE_02_012300155 chr5:65021081-65077568 Sample_02_0123 Haematopoietic and lymphoid tissue GRANTA-519 155 7 1479 111 7 251 0 CWC27
SE_02_075000024 chr5:65021167-65077346 Sample_02_0750 Lymphoma Rec-1_GSI 24 21 1471 111 7 251 0 CWC27
SE_02_078300090 chr5:65021227-65076450 Sample_02_0783 Blood MEC2 90 8 1445 109 6 250 0 CWC27
SE_02_011800053 chr5:65021377-65077624 Sample_02_0118 Haematopoietic and lymphoid tissue MINO 53 4 1472 111 6 250 0 CWC27
SE_02_075100024 chr5:65021400-65078838 Sample_02_0751 Lymphoma Rec-1_WO 24 22 1506 112 6 265 0 CWC27
SE_02_078100096 chr5:65024707-65104733 Sample_02_0781 Lymphoma Pfeiffer_DMSO 96 17 2074 163 9 336 0 CWC27
SE_02_011900028 chr5:65025345-65079032 Sample_02_0119 Haematopoietic and lymphoid tissue PFEIFFER 28 20 1411 100 6 255 0 CWC27
SE_01_005500474 chr5:65025988-65076941 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 474 9 1338 97 5 238 0 CWC27
SE_02_039500112 chr5:65026193-65078124 Sample_02_0395 Mammary gland BT-549 112 6 1369 99 6 240 0 CWC27
SE_02_017100521 chr5:65026999-65038877 Sample_02_0171 Lung IMR-90_proliferating 521 2 319 12 0 55 0 CWC27
SE_02_073600033 chr5:65027261-65079084 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 33 30 1360 96 6 242 0 CWC27
SE_02_017300814 chr5:65028180-65038164 Sample_02_0173 Lung IMR-90_senescent 814 2 276 11 0 25 0 CWC27
SE_02_141800302 chr5:65029173-65042428 Sample_02_1418 Brain SF9427 302 5 358 13 0 61 0 CWC27
SE_02_095100240 chr5:65029173-65042918 Sample_02_0951 HMSCs hMSCs 240 6 376 14 0 61 0 CWC27
SE_02_155200626 chr5:65030112-65044673 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 626 2 400 14 0 65 0 CWC27
SE_02_017500578 chr5:65030145-65039058 Sample_02_0175 Lung IMR-90_Etoposide 578 6 251 9 0 40 0 CWC27
SE_02_018200882 chr5:65030644-65042234 Sample_02_0182 melanoma LOX-IMVI 882 2 318 11 0 59 0 CWC27
SE_02_142800546 chr5:65030785-65042595 Sample_02_1428 Shoulder fibroblast_316 546 2 323 9 0 59 0 CWC27
SE_02_142701037 chr5:65030968-65042248 Sample_02_1427 Shoulder fibroblast_343 1037 3 303 8 0 59 0 CWC27
SE_01_005600843 chr5:65030986-65043091 Sample_01_0056 Bone osteoblast 843 2 334 9 0 59 0 CWC27
SE_02_147100985 chr5:65031157-65042618 Sample_02_1471 Blood Outgrowth Endothelia BOEC 985 4 304 8 0 59 0 CWC27
SE_02_142600589 chr5:65031166-65042628 Sample_02_1426 Shoulder fibroblast_341 589 3 305 8 0 59 0 CWC27
SE_02_063800635 chr5:65031175-65042788 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 635 6 312 9 0 59 0 CWC27
SE_02_142500352 chr5:65031320-65042671 Sample_02_1425 Shoulder fibroblast_384 352 4 298 9 0 59 0 CWC27
SE_02_145200570 chr5:65031416-65041587 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 570 3 263 7 0 53 0 CWC27
SE_02_009200185 chr5:65031442-65042457 Sample_02_0092 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_3 185 3 286 8 0 58 0 CWC27
SE_02_009000325 chr5:65032426-65036724 Sample_02_0090 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_6 325 2 126 6 0 14 0 CWC27
SE_02_053300694 chr5:65033524-65076776 Sample_02_0533 Blood vessel Circle of Willis_54y 694 15 1142 87 5 199 0 CWC27
SE_02_073900344 chr5:65033596-65067115 Sample_02_0739 Blood Nalm6 344 10 868 69 3 108 0 CWC27
SE_02_088500482 chr5:65033665-65063655 Sample_02_0885 Blood NALM6_2 482 4 783 60 3 87 0 CWC27
SE_02_036300274 chr5:65033846-65063465 Sample_02_0363 Haematopoietic and lymphoid tissue 697 274 4 777 60 3 87 0 CWC27
SE_01_009300983 chr5:65034206-65076695 Sample_01_0093 Aorta ascending aorta 983 8 1118 85 5 194 0 CWC27
SE_02_057300412 chr5:65034418-65066954 Sample_02_0573 Blood Nalm6_1 412 12 842 67 3 93 0 CWC27
SE_02_093800360 chr5:65034613-65043050 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 360 1 227 6 0 41 0 CWC27
SE_02_093600434 chr5:65034789-65043026 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 434 2 224 5 0 41 0 CWC27
SE_02_155700563 chr5:65034826-65036713 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 563 1 63 1 0 3 0 CWC27
SE_02_062000773 chr5:65034940-65042361 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 773 3 195 3 0 41 0 CWC27
SE_02_093800354 chr5:65058699-65076863 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 354 4 499 50 4 136 0 CWC27
SE_02_086600067 chr5:65058713-65106682 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 67 13 1253 121 8 234 0 CWC27
SE_02_086300027 chr5:65059128-65156355 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 27 17 2474 213 14 437 352 ADAMTS6,CWC27
SE_02_047400415 chr5:65059217-65080433 Sample_02_0474 Fibroblast umbilical cord Fibroblast 415 3 572 60 5 157 0 CWC27
SE_02_123900071 chr5:65059277-65104143 Sample_02_1239 Skin Waga_virus_positive 71 14 1188 113 7 219 0 CWC27
SE_01_006600683 chr5:65059290-65080546 Sample_01_0066 Smooth muscle smooth-muscle-cell 683 5 575 58 5 157 0 CWC27
SE_02_093600515 chr5:65059407-65076742 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 515 4 480 48 3 136 0 CWC27
SE_00_005300088 chr5:65059448-65103881 Sample_00_0053 Embryo trophoblast cell originated from H1 88 25 1180 112 7 217 0 CWC27
SE_02_135600419 chr5:65059482-65079520 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 419 3 548 53 4 157 0 CWC27
SE_02_086200070 chr5:65059551-65107255 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 70 12 1248 120 7 234 0 CWC27
SE_02_008800429 chr5:65059736-65078576 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 429 5 520 50 4 149 0 CWC27
SE_02_123700222 chr5:65059794-65076933 Sample_02_1237 Skin MKL2_virus_positive 222 3 469 46 3 136 0 CWC27
SE_02_086500059 chr5:65059826-65107361 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 59 11 1240 120 7 234 0 CWC27
SE_02_008900319 chr5:65059889-65077533 Sample_02_0089 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_3 319 5 485 47 4 136 0 CWC27
SE_02_123600153 chr5:65060072-65079957 Sample_02_1236 Skin MKL1_virus_positive 153 7 537 54 4 157 0 CWC27,ADAMTS6
SE_02_009200385 chr5:65060170-65077080 Sample_02_0092 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_3 385 6 464 46 4 136 0 CWC27
SE_02_086400068 chr5:65060589-65106874 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 68 9 1207 114 7 234 0 CWC27
SE_02_041100090 chr5:65060591-65106793 Sample_02_0411 Liver TTC549_untreated 90 5 1202 113 7 234 0 CWC27
SE_02_045300129 chr5:65060823-65152750 Sample_02_0453 Neuroblastoma SJNB3 129 23 2346 200 13 429 352 ADAMTS6,CWC27
SE_02_041200107 chr5:65062008-65105923 Sample_02_0412 Liver TTC549_Doxycycline 107 9 1145 106 7 227 0 CWC27
SE_02_101701870 chr5:65062297-65103820 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1870 10 1090 97 6 208 0 CWC27
SE_02_013800154 chr5:65075120-65082295 Sample_02_0138 Brain RT172 154 1 188 17 2 39 0 CWC27
SE_02_063500008 chr5:65095962-65144477 Sample_02_0635 Synovial sarcoma HSSYII_Untreated 8 16 1220 103 6 153 0 CWC27
SE_02_137600941 chr5:65100753-65128789 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 941 7 660 58 3 105 0 CWC27
SE_02_017300382 chr5:65101048-65128992 Sample_02_0173 Lung IMR-90_senescent 382 7 661 58 3 105 0 CWC27
SE_02_095600783 chr5:65101408-65136974 Sample_02_0956 Brain IDH1_2658 783 7 857 69 4 116 0 CWC27
Genomic distribution of SEs associated with CWC27
Genome Browser

The strength of the tissue affected by the gene

Expression of CWC27

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)